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Gut and food intolerance

Bloating, dairy, gluten — the most-searched symptoms with real genetics behind some.

Why this topic Gut health is the most-marketed claim in food, with the least labelling.

In the news

2026-02-13 · Uppsala University & University of Gothenburg (two companion GWAS studies, Nature Genetics; >16,000 Swedish adults + 12,000+ Norwegian replication cohort)

11 Genetic Variants Linked to Gut Microbiome Composition via GWAS

Two companion GWAS papers (Uppsala University's Tove Fall and University of Gothenburg's Claes Ohlsson, in Nature Genetics) analyzed gut bacteria composition in over 16,000 Swedish adults and replicated the findings in 12,000+ Norwegians, confirming 11 genetic variants that shape the gut microbiome -- 9 newly discovered, plus 2 already known: LCT (lactase, rs4988235, profiled on this site) and ABO (blood type). The LCT finding is a direct mechanistic explanation for why lactase non-persistence reshapes gut bacteria, not just lactose digestion. Northern European cohorts only -- the researchers themselves caution results may not generalize globally.

What this topic connects to

Gut and food intolerance Variant: rs4988235 rs4988235 Variant Variant: rs1738074 rs1738074 Variant Variant: rs11209026 rs11209026 Variant Variant: rs17810546 rs17810546 Variant Variant: rs2298428 rs2298428 Variant Variant: +35 more +35 more Variant Gut and food intolerance Gut and food intolerance

Solid lines are connections this site curates. Dashed lines mean the two ends share a research paper — worth knowing, and not a claim that one explains the other.

Variants that share a paper with this

Counted in Europe PMC, where the title or abstract names both this topic and that rsID. The number is papers, not evidence of a cause.

rs4988235

MCM6 / LCT

Lactose tolerance

22 papers →

rs1738074

TAGAP

Multiple sclerosis

5 papers →

rs11209026

IL23R

Crohn's disease

4 papers →

rs17810546

IL12A

Celiac disease

4 papers →

rs2298428

UBE2L3

Celiac disease or Rheumatoid arthritis

3 papers →

rs13003464

PUS10

Ulcerative colitis

2 papers →

rs1893217

PTPN2

Ulcerative colitis

2 papers →

rs1990760

IFIH1

Type 1 diabetes

2 papers →

rs2241880

ATG16L1

Crohn's disease

2 papers →

rs2327832

TNFAIP3

Celiac disease

2 papers →

rs429358

APOE

Lewy body disease

2 papers →

rs55743914

PTPRK

Celiac disease

2 papers →

rs601338

FUT2

Secretor status

2 papers →

rs9939609

FTO

Menarche (age at onset)

2 papers →

rs10004195

FAM114A1

Helicobacter pylori serologic status

1 paper →

rs10484554

HLA-C

Psoriasis

1 paper →

rs11203203

UBASH3A

Vitiligo

1 paper →

rs1143679

ITGAM

Systemic lupus erythematosus

1 paper →

rs1175550

CCDC27

Blood trace element (Cu levels)

1 paper →

rs1229984

ADH1B

Alcohol metabolism speed

1 paper →

rs12521868

IL3

Crohn's disease

1 paper →

rs12708716

KIAA0350

Type 1 diabetes

1 paper →

rs1551398

near TRIB1

Crohn's disease

1 paper →

rs17388568

ADAD1

Self-reported allergy

1 paper →

rs17822931

ABCC11

Earwax type & body odor

1 paper →

rs1799969

ICAM1

Soluble ICAM-1

1 paper →

rs1800693

TNFRSF1A

Primary biliary cholangitis

1 paper →

rs1801133

MTHFR

Folate metabolism (MTHFR C677T)

1 paper →

rs2030519

LPP

Celiac disease

1 paper →

rs2114039

PDGFRA

Corneal curvature

1 paper →

rs2395029

HLA-B

HIV-1 control

1 paper →

rs2769264

PSMB4

Blood trace element (Cu levels)

1 paper →

rs2903692

KIAA0350

Type 1 diabetes

1 paper →

rs333

CCR5

HIV-1 resistance (CCR5-delta32)

1 paper →

rs4077468

SLC26A9

Cystic fibrosis-related diabetes

1 paper →

rs4149056

SLCO1B1

Statin muscle-side-effect risk

1 paper →

rs6441286

IL12A

Primary biliary cholangitis

1 paper →

rs6478109

TNFSF15

Crohn's disease

1 paper →

rs78037977

FASLG

Type 1 diabetes

1 paper →

rs7927894

C11orf30

Crohn's disease

1 paper →

How this was counted

Europe PMC, title and abstract only, searched for “lactose intolerance”, “irritable bowel syndrome”, “coeliac disease”, “celiac disease”, “gut microbiome” alongside each published rsID. Full text was not counted: it returns every paper with an rsID buried in a supplementary table. Recounted monthly.

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Gut and food intolerance. MyGeneLog™. https://www.mygenelog.com/topics/gut

Questions about Gut and food intolerance

What is Gut and food intolerance?

Gut and food intolerance is this site's topic page for bloating, dairy and gluten — the most-searched digestive symptoms, some of which have real genetics behind them.

Is food intolerance genetic?

For some of it, yes — lactose intolerance in particular has a well-understood genetic basis. For much of the rest, like general bloating, the genetics is far thinner than gut-health marketing suggests.

Why is gut and food intolerance a topic on this site now?

Gut health is the most-marketed claim in food right now, and also the least labelled — exactly the gap a page grounded in actual genetics research is meant to fill.

How does this site decide which variants are linked to gut and food intolerance?

Europe PMC is searched for lactose intolerance, irritable bowel syndrome, coeliac disease or gut microbiome appearing in a paper's title or abstract alongside a published rsID, recounted every month.