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Contraceptive

Combined hormonal contraceptives

A case where two risks multiply rather than add. Estrogen raises clot risk on its own; in someone who also carries a thrombophilia variant the two compound.

Chemical structure of Combined hormonal contraceptives: ethinylestradiol, drawn by MyGeneLog™ from PubChem records
Chemical structure of ethinylestradiol, drawn by MyGeneLog™ from public PubChem records. Free to reuse under CC BY 4.0 with credit to MyGeneLog™.

What this drug connects to

Combined hormonal contraceptives Condition: Factor V Leiden Thrombophilia Factor V Leiden Thrombophilia Condition Variant: rs6670393 · F5 rs6670393 · F5 Variant Variant: rs9332539 · F5 rs9332539 · F5 Variant Variant: rs192253150 · F5 rs192253150 · F5 Variant Variant: rs966751 · F5 rs966751 · F5 Variant Variant: rs3820060 · F5 rs3820060 · F5 Variant Variant: +31 more +31 more Variant Topic: Heart and circulation Heart and circulation Topic Combined hormonal contraceptives Combined hormonal contracepti… Contraceptive

Solid lines are connections this site curates. Dashed lines mean the two ends share a research paper — worth knowing, and not a claim that one explains the other.

The genes involved

F5

Factor V Leiden Thrombophilia →

Estrogen-containing contraception raises venous clot risk on its own, and in someone who also carries factor V Leiden the two effects multiply rather than simply add, producing a substantially higher risk than either factor alone. US CDC Medical Eligibility Criteria place combined hormonal contraceptives in category 4 — an unacceptable health risk — for people with a known thrombogenic mutation such as factor V Leiden. The same guidance states that routine screening for these mutations before starting contraception is not recommended, and the wider thrombophilia-screening literature gives the reason: the variant is uncommon and screening everyone yields little benefit for its cost. This is background information about a documented gene-drug interaction. It is not a recommendation to start, stop or switch any contraceptive; that decision belongs with your clinician.

CDC US Medical Eligibility Criteria for Contraceptive Use — combined hormonal contraceptives, thrombogenic mutations (category 4). PharmGKB/ClinPGx carries a clinical annotation for the F5 variant with hormonal contraceptives (evidence level 2A); there is no CPIC prescribing guideline for F5. Background evidence: Mohllajee AP et al., systematic review of hormonal contraceptive use in women with thrombogenic mutations, Contraception 2006, PMID 16413847.

In the news

2023-10-19 · Uppsala University (Valeria Lo Faro, Therese Johansson, Åsa Johansson), covering research published in the American Journal of Obstetrics & Gynecology (244,420 women, UK Biobank)

Genetics Influence the Risk of Blood Clots in Oral Contraceptive Users

A UK Biobank study of 244,420 women found that those with a high genetic risk score had six times the blood-clot risk during the first two years of oral contraceptive use compared to women with a low genetic risk score -- a broader polygenic score, built on top of the established single-variant risk this site already covers: Factor V Leiden (rs6025) and the prothrombin variant (rs1799963), both known to raise clotting risk sharply when combined with hormonal contraceptives. The elevated risk was concentrated in the first two years of use, not sustained use.

Whose work this rests on

Every guideline above was written by people. Named here because they are contributors to this page in the same sense anybody else on this site is.

Variants MyGeneLog™ reports for these genes

These are the positions in your own file that carry the genes above. Not every gene in a guideline is one we report — where that is the case the gene appears above without a variant here, and the note says so.

Serum levels of protein PLXDC2

F5 · rs6670393

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DNA methylation Hannum age acceleration

F5 · rs9332539

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Calcium/calmodulin-dependent protein kinase type 1 levels

F5 · rs192253150

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Solute carrier family 22 member 16 levels (SLC22A16.9969.8.3)

F5 · rs966751

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Serum levels of protein C11orf87

F5 · rs3820060

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SELP protein levels

F5 · rs74581078

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Cerebrospinal fluid protein SELP levels

F5 · rs4656688

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SELP protein levels

F5 · rs9332688

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Serum levels of protein F5

F5 · rs9332599

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Optic disc size

F5 · rs6030

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Vertical cup-disc ratio

F5 · rs10753787

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Stem cell factor levels

F5 · rs1557570

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Stem cell growth factor beta levels

F5 · rs4656185

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Coagulation Factor V levels

F5 · rs9332701

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Tissue factor pathway inhibitor levels

F5 · rs3766104

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Solute carrier family 22 member 16 levels

F5 · rs9332661

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Torsin-1A-interacting protein 1 levels

F5 · rs6027

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Venous thromboembolism

F5 · rs4524

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Serum levels of protein SURF1

F5 · rs72708013

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Serum levels of protein CDH7

F5 · rs10800457

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Sulfotransferase family cytosolic 1B member 1 levels

F5 · rs6701330

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Sulfotransferase family cytosolic 1B member 1 levels

F5 · rs6663533

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Sialic acid-binding Ig-like lectin 11 levels (SIGLEC11.8913.22.3)

F5 · rs9287090

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Junctophilin-1 levels

F5 · rs9332635

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Coagulation Factor V levels

F5 · rs6037

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Uncharacterized protein KIAA0040 levels

F5 · rs9287092

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Optic disc area

F5 · rs2239854

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Blood clotting risk (Factor V Leiden)

F5 · rs6025

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Calcium/calmodulin-dependent protein kinase type 1 levels (CAMK1.3592.4.3)

F5 · rs9332591

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Tissue factor pathway inhibitor levels

F5 · rs9332655

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Protein Wnt-3a levels

F5 · rs2301519

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Solute carrier family 22 member 16 levels

F5 · rs2213867

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Tissue factor pathway inhibitor levels

F5 · rs9332629

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Proteasome subunit alpha type-5 levels

F5 · rs9332673

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Junctophilin-1 levels

F5 · rs9332609

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SELP protein levels

F5 · rs2027885

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Questions about Combined hormonal contraceptives

What are combined hormonal contraceptives?

Combined hormonal contraceptives — estrogen-containing pills, patches, rings and injections — are a case where two clot risks multiply rather than add. Estrogen raises clot risk on its own; in someone who also carries a thrombophilia variant, the two compound.

Does Factor V Leiden mean I can’t take combined hormonal contraceptives?

US CDC guidance places combined hormonal contraceptives in category 4 — an unacceptable health risk — for people with a known thrombogenic mutation such as Factor V Leiden, because the two clot-risk factors multiply rather than simply add.

Should everyone be screened for Factor V Leiden before starting combined hormonal contraceptives?

No — the same CDC guidance states routine screening for these mutations before starting contraception is not recommended, because the variant is uncommon and screening everyone yields little benefit for its cost.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

Combined hormonal contraceptives. MyGeneLog™. https://www.mygenelog.com/drugs/hormonal-contraceptives

This page is educational and contains no dosing information. Where a clinical guideline covers one of these gene-drug pairs it is written for prescribers and works through validated algorithms alongside clinical monitoring. Nothing here is a reason to start, stop, or change a medication — that conversation belongs with the clinician or pharmacist managing your treatment.