Gene Knowledge Graph
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Variants linked to Cholesterol (LDL, HDL and Total)

Continuously updated · newest added Nov 8, 2026

1,538 positions on this site are linked to Cholesterol (LDL, HDL and Total), out of 2,506,722 published in total. Each was published only after passing the same quality gate; being on this list is an association, not a diagnosis.

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Recommended (connected, strongest) Strongest evidence Newest Oldest

Strength of the evidence: all 2+ 3+ 4 Connections: all only those linked to a condition, drug or sense

← Back to Cholesterol (LDL, HDL and Total)

Standard

High density lipoprotein cholesterol levels

CSGALNACT1 · rs113920320

See detailed info → Standard

Phospholipids to Total Lipids in Small HDL percentage

SYNJ2BP · rs1060681

See detailed info → Standard

Low density lipoprotein cholesterol levels

COG5 · rs10248717

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HDL cholesterol

near MIR129-1 · rs7778167

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Phospholipids to Total Lipids in Large LDL percentage

SEC16A · rs55824202

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Phospholipids to Total Lipids in Medium HDL percentage

SEC14L6 · rs7287003

See detailed info → Standard

Low density lipoprotein cholesterol levels

SNX27 · rs184980867

See detailed info → Standard

Phospholipids to Total Lipids in Large LDL percentage

SIGLEC1 · rs625372

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Cholesteryl Esters to Total Lipids in Large HDL percentage

ARL14EP-DT · rs61886116

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High density lipoprotein cholesterol levels

FKTN · rs577703186

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Total cholesterol levels

near SKAP1 · rs7212325

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Low density lipoprotein cholesterol levels

PLXND1 · rs56299595

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HDL cholesterol

INSR · rs56149994

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High density lipoprotein cholesterol levels

CPT1A · rs2003892

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Low density lipoprotein cholesterol levels

GRIK2 · rs62419249

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Low density lipoprotein cholesterol levels

EFNA1 · rs4390169

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Cholesteryl Esters to Total Lipids in IDL percentage

PPARA · rs45552534

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Total cholesterol levels

near HLA-B · rs12173764

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Total cholesterol levels

near SLC17A8 · rs10860591

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Total cholesterol levels

PLXND1 · rs11920311

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Questions about variants on this site

What is a "variant" page on this site?

One specific position in the genome (an rsID), explained in plain language with what published research has found it linked to, and how strong that link actually is.

Where does new variant data come from?

The public GWAS Catalog, checked every twenty minutes, plus variants added manually after research review. Every one passes the same quality gate before publishing.

Does being listed here mean a variant causes a condition?

No. Listing reflects an association from published research, not a diagnosis or a cause. Most common variants shift probability modestly rather than determining an outcome.

Can I search this list by gene or rsID?

Yes — the search box above matches gene symbols and rsIDs as well as trait names.