Variants linked to Systemic Lupus Erythematosus

Continuously updated · newest added Oct 23, 2026

722 positions on this site are linked to Systemic Lupus Erythematosus, out of 112,611 published in total. Each was published only after passing the same quality gate; being on this list is an association, not a diagnosis.

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Sensitive

Systemic lupus erythematosus

HLA-DOB · rs55875672

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Sensitive

Systemic lupus erythematosus

HCP5 · rs9267325

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Sensitive

Systemic lupus erythematosus

MIR3142HG · rs2431700

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Sensitive

Systemic lupus erythematosus

MICA-AS1 · rs2507978

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Sensitive

Systemic lupus erythematosus

PBX2 · rs1004095

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Sensitive

Systemic lupus erythematosus (MTAG)

near DDX6 · rs11217033

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Sensitive

Systemic lupus erythematosus (MTAG)

ATG5 · rs1322178

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Sensitive

Systemic lupus erythematosus (MTAG)

ANKS1A · rs2177380

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Sensitive

Systemic lupus erythematosus (MTAG)

near TCP11 · rs1886243

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Sensitive

Systemic lupus erythematosus (MTAG)

CMAHP · rs927984

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Sensitive

Systemic lupus erythematosus (MTAG)

WAKMAR2 · rs670369

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Sensitive

Systemic lupus erythematosus (MTAG)

near CTLA4 · rs231804

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Sensitive

Systemic lupus erythematosus (MTAG)

PHRF1 · rs936469

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Sensitive

Systemic lupus erythematosus (MTAG)

STAT4-AS1 · rs3024908

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Sensitive

Systemic lupus erythematosus (MTAG)

CLEC16A · rs3893660

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Sensitive

Systemic lupus erythematosus (MTAG)

STAT4-AS1 · rs16833177

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Sensitive

Systemic lupus erythematosus (MTAG)

TMEM39A · rs3732421

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Sensitive

Systemic lupus erythematosus (MTAG)

near NAB1 · rs1155060

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Sensitive

Systemic lupus erythematosus (MTAG)

near CYCSP20 · rs2084654

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Sensitive

Systemic lupus erythematosus

near HLA-DRB1 · rs9270539

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Questions about variants on this site

What is a "variant" page on this site?

One specific position in the genome (an rsID), explained in plain language with what published research has found it linked to, and how strong that link actually is.

Where does new variant data come from?

The public GWAS Catalog, checked every twenty minutes, plus variants added manually after research review. Every one passes the same quality gate before publishing.

Does being listed here mean a variant causes a condition?

No. Listing reflects an association from published research, not a diagnosis or a cause. Most common variants shift probability modestly rather than determining an outcome.

Can I search this list by gene or rsID?

Yes — the search box above matches gene symbols and rsIDs as well as trait names.