Gene Knowledge Graph
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Variants linked to Cholesterol (LDL, HDL and Total)

Continuously updated · newest added Nov 8, 2026

1,538 positions on this site are linked to Cholesterol (LDL, HDL and Total), out of 2,506,432 published in total. Each was published only after passing the same quality gate; being on this list is an association, not a diagnosis.

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Recommended (connected, strongest) Strongest evidence Newest Oldest

Strength of the evidence: all 2+ 3+ 4 Connections: all only those linked to a condition, drug or sense

← Back to Cholesterol (LDL, HDL and Total)

Standard

Low density lipoprotein cholesterol levels

SEC16A · rs13301660

See detailed info → Standard

Phosphoglycerides levels

MTTP · rs4552468

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Low density lipoprotein cholesterol levels

near EEPD1 · rs12533280

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LDL cholesterol

SDK1 · rs573200822

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Total cholesterol levels

NR1H4 · rs116552003

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HDL cholesterol

MAPT · rs117499775

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Total cholesterol levels

OTOF · rs13025681

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Phospholipids to Total Lipids in Large HDL percentage

FGD5 · rs6766170

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Free Cholesterol to Total Lipids in Medium HDL percentage

near GADD45G · rs10465231

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Phospholipids to Total Lipids in Small HDL percentage

near ZCCHC2 · rs34170196

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Low density lipoprotein cholesterol levels

LINC02456 · rs978458

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Cholesterol in Small HDL

GLP2R · rs7222664

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Cholesteryl Esters to Total Lipids in Very Small VLDL percentage

PRELID1 · rs4073745

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Low density lipoprotein cholesterol levels

near VN1R1 · rs181976063

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Total cholesterol levels

SLC33A1 · rs76440173

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Low density lipoprotein cholesterol levels

ZNF846 · rs1042540024

See detailed info → Standard

Low density lipoprotein cholesterol levels

PDXDC2P-NPIPB14P · rs181501802

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Total cholesterol levels

SGCD · rs17053386

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High density lipoprotein cholesterol levels

UBE2D3 · rs74332078

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Free Cholesterol to Total Lipids in Medium VLDL percentage

SLC9B1 · rs143148372

See detailed info →

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Questions about variants on this site

What is a "variant" page on this site?

One specific position in the genome (an rsID), explained in plain language with what published research has found it linked to, and how strong that link actually is.

Where does new variant data come from?

The public GWAS Catalog, checked every twenty minutes, plus variants added manually after research review. Every one passes the same quality gate before publishing.

Does being listed here mean a variant causes a condition?

No. Listing reflects an association from published research, not a diagnosis or a cause. Most common variants shift probability modestly rather than determining an outcome.

Can I search this list by gene or rsID?

Yes — the search box above matches gene symbols and rsIDs as well as trait names.