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Standard

Cholesterol in Small HDL

GLP2R · rs7222664

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−10, with 3 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 434,646 British ancestry individuals, 8,796 British Central/South Asian individuals, 6,573 British African individuals.

The effect Each copy of the C allele shifted the measure 0.01 mmol/L higher (95% confidence interval 0.01-0.01); p = 7 × 10−11.

Where it sits Chromosome 17, band 17p13.1 — in an intron of GLP2R.

How common each version is

CG
Korean KRGDB
C 0.1% · G 99.9%
Japanese ToMMo
G 100.0%
Vietnamese
C 2.4% · G 97.6%
World gnomAD
C 31.9% · G 68.1%
World 1000 Genomes
C 23.1% · G 76.9%
World TOPMed
C 31.6% · G 68.4%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study.

What each result means

C/C Two copies of the version the research linked to Cholesterol in Small HDL. That is the strongest link of the three results. A link in a study is not a diagnosis.
C/G One copy of the version the research linked to Cholesterol in Small HDL. That is a smaller link than two copies.
G/G No copy of the version the research linked to Cholesterol in Small HDL. This is the starting point the study compared everyone against.
Source

Quoting this page

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Cholesterol in Small HDL (rs7222664). MyGeneLog™. https://www.mygenelog.com/variants/rs7222664

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