Sensitive

Basal cell carcinoma

HLA-B · rs1050529

Where this position leads

Condition: Basal Cell Carcinoma

Drugs: Abacavir, Allopurinol, Carbamazepine and oxcarbazepine

rs1050529 Condition: Basal Cell Carcinoma Basal Cell Carcinoma Condition Drug: Abacavir Abacavir Drug Drug: Allopurinol Allopurinol Drug Drug: Carbamazepine and oxcarbazepine Carbamazepine and oxcarbazepine Drug rs1050529 rs1050529 HLA-B

What the study found

Who was studied 12.945 European ancestry cases, 274,252 European ancestry controls; replicated in 4,242 European ancestry cases, 12,802 European ancestry controls.

The effect Each copy of the C allele carried 1.11 times the odds of Basal cell carcinoma; p = 3 × 10−9.

How common The C allele had a frequency of about 75% in the people studied.

Where it sits Chromosome 6, band 6p21.33 — a missense change in HLA-B.

What each result means

C/C Two copies of the version the research linked to Basal cell carcinoma. That is the strongest link of the three results. A link in a study is not a diagnosis.
C/T One copy of the version the research linked to Basal cell carcinoma. That is a smaller link than two copies.
T/T No copy of the version the research linked to Basal cell carcinoma. This is the starting point the study compared everyone against.
Source

Questions about rs1050529

What is rs1050529?

rs1050529 is a single position in the genome, in or near the HLA-B gene. Published research associates it with basal cell carcinoma. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs1050529 linked to?

On MyGeneLog this position is linked to Basal Cell Carcinoma. The research behind each link, and its sources, are set out on that condition page.

Does rs1050529 affect how medicines work?

HLA-B carries pharmacogenomic findings for Abacavir, Allopurinol, Carbamazepine and oxcarbazepine. That is educational information, not a prescription or a dosing guide. Any decision to start, stop or change a medicine belongs with the clinician or pharmacist managing your treatment.

Does having rs1050529 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs1050529 come from?

GWAS Catalog, Nat Commun 2016, PMID:27539887. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

Basal cell carcinoma (rs1050529). MyGeneLog™. https://www.mygenelog.com/variants/rs1050529

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