Gene Knowledge Graph
UTC
Sensitive

Nephrotic syndrome without mention of glomerulonephritis (PheCode 580.2)

near LINC02740 · rs534357542

Where this position leads

Condition: Nephrotic Syndrome without Mention of Glomerulonephritis

rs534357542 Condition: Nephrotic Syndrome without Mention of Glomerulonephritis Nephrotic Syndrome without Mention … Condition rs534357542 rs534357542 near LINC027…

What the study found

Who was studied 580 African American or Afro-Caribbean cases, 120,792 African American or Afro-Caribbean controls, 1,068 European ancestry cases, 449,105 European ancestry controls, 217 Hispanic or Latin American cases, 59,481 Hispanic or Latin American controls.

The effect Each copy of the G allele shifted the measure 3.26 lower (95% confidence interval 3.24-3.28); p = 2 × 10−12.

How common The G allele had a frequency of about 100% in the people studied.

Where it sits Chromosome 11, band 11p12 — between genes, 89 kb from LINC02740.

What each result means

A/A No copy of the version the research linked to Nephrotic syndrome without mention of glomerulonephritis (PheCode 580.2). This is the starting point the study compared everyone against.
A/G One copy of the version the research linked to Nephrotic syndrome without mention of glomerulonephritis (PheCode 580.2). That is a smaller link than two copies.
G/G Two copies of the version the research linked to Nephrotic syndrome without mention of glomerulonephritis (PheCode 580.2). That is the strongest link of the three results. A link in a study is not a diagnosis.
Source
Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program
Verma A, Huffman JE, Rodriguez A, Conery M, Liu M, Ho YL, Kim Y, Heise DA, Guare L, Panickan VA, Garcon H, Linares F
and 59 more — show all
Costa L, Goethert I, Tipton R, Honerlaw J, Davies L, Whitbourne S, Cohen J, Posner DC, Sangar R, Murray M, Wang X, Dochtermann DR, Devineni P, Shi Y, Nandi TN, Assimes TL, Brunette CA, Carroll RJ, Clifford R, Duvall S, Gelernter J, Hung A, Iyengar SK, Joseph J, Kember R, Kranzler H, Kripke CM, Levey D, Luoh SW, Merritt VC, Overstreet C, Deak JD, Grant SFA, Polimanti R, Roussos P, Shakt G, Sun YV, Tsao N, Venkatesh S, Voloudakis G, Justice A, Begoli E, Ramoni R, Tourassi G, Pyarajan S, Tsao P, O'Donnell CJ, Muralidhar S, Moser J, Casas JP, Bick AG, Zhou W, Cai T, Voight BF, Cho K, Gaziano JM, Madduri RK, Damrauer S, Liao KP
Science (New York, N.Y.) · 2024 · PMID 39024449 · open access

Questions about rs534357542

What is rs534357542?

rs534357542 is a single position in the genome, in or near the near LINC02740 gene. Published research associates it with nephrotic syndrome without mention of glomerulonephritis (phecode 580.2). A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs534357542 linked to?

On MyGeneLog this position is linked to Nephrotic Syndrome without Mention of Glomerulonephritis. The research behind each link, and its sources, are set out on that condition page.

Does having rs534357542 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs534357542 come from?

GWAS Catalog, Science (New York, N.Y.) 2024, PMID:39024449. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

Nephrotic syndrome without mention of glomerulonephritis (PheCode 580.2) (rs534357542). MyGeneLog™. https://www.mygenelog.com/variants/rs534357542

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