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Acute gastritis (PheCode 535.1)

SORCS2 · rs531563674

Where this position leads

Condition: Acute Gastritis

rs531563674 Condition: Acute Gastritis Acute Gastritis Condition rs531563674 rs531563674 SORCS2

What the study found

Who was studied 758 African American or Afro-Caribbean cases, 117,763 African American or Afro-Caribbean controls, 1,641 European ancestry cases, 441,506 European ancestry controls, 292 Hispanic or Latin American cases, 58,221 Hispanic or Latin American controls.

The effect Each copy of the A allele shifted the measure 3.86 lower (95% confidence interval 3.84-3.87); p = 1 × 10−11.

How common The A allele had a frequency of about 100% in the people studied.

Where it sits Chromosome 4, band 4p16.1 — in an intron of SORCS2.

What each result means

A/A Two copies of the version the research linked to Acute gastritis (PheCode 535.1). That is the strongest link of the three results. A link in a study is not a diagnosis.
A/C One copy of the version the research linked to Acute gastritis (PheCode 535.1). That is a smaller link than two copies.
C/C No copy of the version the research linked to Acute gastritis (PheCode 535.1). This is the starting point the study compared everyone against.
Source
Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program
Verma A, Huffman JE, Rodriguez A, Conery M, Liu M, Ho YL, Kim Y, Heise DA, Guare L, Panickan VA, Garcon H, Linares F
and 59 more — show all
Costa L, Goethert I, Tipton R, Honerlaw J, Davies L, Whitbourne S, Cohen J, Posner DC, Sangar R, Murray M, Wang X, Dochtermann DR, Devineni P, Shi Y, Nandi TN, Assimes TL, Brunette CA, Carroll RJ, Clifford R, Duvall S, Gelernter J, Hung A, Iyengar SK, Joseph J, Kember R, Kranzler H, Kripke CM, Levey D, Luoh SW, Merritt VC, Overstreet C, Deak JD, Grant SFA, Polimanti R, Roussos P, Shakt G, Sun YV, Tsao N, Venkatesh S, Voloudakis G, Justice A, Begoli E, Ramoni R, Tourassi G, Pyarajan S, Tsao P, O'Donnell CJ, Muralidhar S, Moser J, Casas JP, Bick AG, Zhou W, Cai T, Voight BF, Cho K, Gaziano JM, Madduri RK, Damrauer S, Liao KP
Science (New York, N.Y.) · 2024 · PMID 39024449 · open access

Questions about rs531563674

What is rs531563674?

rs531563674 is a single position in the genome, in or near the SORCS2 gene. Published research associates it with acute gastritis (phecode 535.1). A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs531563674 linked to?

On MyGeneLog this position is linked to Acute Gastritis. The research behind each link, and its sources, are set out on that condition page.

Does having rs531563674 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs531563674 come from?

GWAS Catalog, Science (New York, N.Y.) 2024, PMID:39024449. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

Acute gastritis (PheCode 535.1) (rs531563674). MyGeneLog™. https://www.mygenelog.com/variants/rs531563674

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