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Optic cup area

RERE · rs2252865

Where this position leads

Condition: Glaucoma

rs2252865 Condition: Glaucoma Glaucoma Condition rs2252865 rs2252865 RERE

What the study found

Who was studied 20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals; replicated in 7,333 Asian ancestry individuals.

The effect Each copy of the T allele shifted the measure 0.015 higher (95% confidence interval 0.011-0.019); p = 1 × 10−9.

Where it sits Chromosome 1, band 1p36.23 — in an intron of RERE.

What each result means

C/C Published research associates this genotype with typical/baseline likelihood of Optic cup area — no copies of the reported risk allele.
C/T Published research associates this genotype (one copy of the reported risk allele) with an intermediate association with Optic cup area.
T/T Published research associates this genotype (two copies of the reported risk allele) with a higher likelihood of Optic cup area compared to the general population.
Source
New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics
Springelkamp H, Iglesias AI, Mishra A, Höhn R, Wojciechowski R, Khawaja AP, Nag A, Wang YX, Wang JJ, Cuellar-Partida G, Gibson J, Bailey JN
and 71 more — show all
Vithana EN, Gharahkhani P, Boutin T, Ramdas WD, Zeller T, Luben RN, Yonova-Doing E, Viswanathan AC, Yazar S, Cree AJ, Haines JL, Koh JY, Souzeau E, Wilson JF, Amin N, Müller C, Venturini C, Kearns LS, Kang JH, Tham YC, Zhou T, van Leeuwen EM, Nickels S, Sanfilippo P, Liao J, van der Linde H, Zhao W, van Koolwijk LM, Zheng L, Rivadeneira F, Baskaran M, van der Lee SJ, Perera S, de Jong PT, Oostra BA, Uitterlinden AG, Fan Q, Hofman A, Tai ES, Vingerling JR, Sim X, Wolfs RC, Teo YY, Lemij HG, Khor CC, Willemsen R, Lackner KJ, Aung T, Jansonius NM, Montgomery G, Wild PS, Young TL, Burdon KP, Hysi PG, Pasquale LR, Wong TY, Klaver CC, Hewitt AW, Jonas JB, Mitchell P, Lotery AJ, Foster PJ, Vitart V, Pfeiffer N, Craig JE, Mackey DA, Hammond CJ, Wiggs JL, Cheng CY, van Duijn CM, MacGregor S
NEIGHBORHOOD Consortium
Human molecular genetics · 2017 · PMID 28073927

Questions about rs2252865

What is rs2252865?

rs2252865 is a single position in the genome, in or near the RERE gene. Published research associates it with optic cup area. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs2252865 linked to?

On MyGeneLog this position is linked to Glaucoma. The research behind each link, and its sources, are set out on that condition page.

Does having rs2252865 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs2252865 come from?

GWAS Catalog, Hum Mol Genet 2017, PMID:28073927. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

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