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Monocyte count

GPR116 · rs2012011

Where this position leads

Conditions: Blood Cell Counts, Monocyte Count

rs2012011 Condition: Blood Cell Counts Blood Cell Counts Condition Condition: Monocyte Count Monocyte Count Condition rs2012011 rs2012011 GPR116

Strength of the evidence

2 / 4

Its strongest genetic-study result is p = 10−33, with 11 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 170,721 European ancestry individuals.

The effect Each copy of the A allele shifted the measure 0.0369 lower (95% confidence interval 0.027-0.047); p = 2 × 10−12.

How common The A allele had a frequency of about 14% in the people studied.

Where it sits Chromosome 6, band 6p12.3 — in an intron of ADGRF5.

How common each version is

AG
Korean KRGDB
A 16.2% · G 83.8%
Korean Korea4K
A 17.9% · G 82.1%
Korean Korea1K
A 17.7% · G 82.3%
Japanese ToMMo
A 12.4% · G 87.6%
Vietnamese
A 14.6% · G 85.4%
World gnomAD
A 12.9% · G 87.1%
World 1000 Genomes
A 12.3% · G 87.7%
World TOPMed
A 13.1% · G 86.9%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study.

What each result means

A/A Two copies of the version the research linked to Monocyte count. That is the strongest link of the three results. A link in a study is not a diagnosis.
A/G One copy of the version the research linked to Monocyte count. That is a smaller link than two copies.
G/G No copy of the version the research linked to Monocyte count. This is the starting point the study compared everyone against.
Source

Questions about rs2012011

What is rs2012011?

rs2012011 is a single position in the genome, in or near the GPR116 gene. Published research associates it with monocyte count. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs2012011 linked to?

On MyGeneLog this position is linked to Blood Cell Counts, Monocyte Count. The research behind each link, and its sources, are set out on that condition page.

Does having rs2012011 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs2012011 come from?

GWAS Catalog, Cell 2016, PMID:27863252. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

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Monocyte count (rs2012011). MyGeneLog™. https://www.mygenelog.com/variants/rs2012011

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