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Ulcer of esophagus (PheCode 530.12)

LINC00540 · rs190188858

Where this position leads

Condition: Ulcer of Esophagus

rs190188858 Condition: Ulcer of Esophagus Ulcer of Esophagus Condition rs190188858 rs190188858 LINC00540

What the study found

Who was studied 254 African American or Afro-Caribbean cases, 121,164 African American or Afro-Caribbean controls, 2,694 European ancestry cases, 444,824 European ancestry controls, 216 Hispanic or Latin American cases, 59,353 Hispanic or Latin American controls.

The effect Each copy of the G allele shifted the measure 3.92 lower (95% confidence interval 3.91-3.93); p = 3 × 10−12.

How common The G allele had a frequency of about 100% in the people studied.

Where it sits Chromosome 13, band 13q12.11 — in an intron of LINC00540.

What each result means

G/G Two copies of the version the research linked to Ulcer of esophagus (PheCode 530.12). That is the strongest link of the three results. A link in a study is not a diagnosis.
G/T One copy of the version the research linked to Ulcer of esophagus (PheCode 530.12). That is a smaller link than two copies.
T/T No copy of the version the research linked to Ulcer of esophagus (PheCode 530.12). This is the starting point the study compared everyone against.
Source
Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program
Verma A, Huffman JE, Rodriguez A, Conery M, Liu M, Ho YL, Kim Y, Heise DA, Guare L, Panickan VA, Garcon H, Linares F
and 59 more — show all
Costa L, Goethert I, Tipton R, Honerlaw J, Davies L, Whitbourne S, Cohen J, Posner DC, Sangar R, Murray M, Wang X, Dochtermann DR, Devineni P, Shi Y, Nandi TN, Assimes TL, Brunette CA, Carroll RJ, Clifford R, Duvall S, Gelernter J, Hung A, Iyengar SK, Joseph J, Kember R, Kranzler H, Kripke CM, Levey D, Luoh SW, Merritt VC, Overstreet C, Deak JD, Grant SFA, Polimanti R, Roussos P, Shakt G, Sun YV, Tsao N, Venkatesh S, Voloudakis G, Justice A, Begoli E, Ramoni R, Tourassi G, Pyarajan S, Tsao P, O'Donnell CJ, Muralidhar S, Moser J, Casas JP, Bick AG, Zhou W, Cai T, Voight BF, Cho K, Gaziano JM, Madduri RK, Damrauer S, Liao KP
Science (New York, N.Y.) · 2024 · PMID 39024449 · open access

Questions about rs190188858

What is rs190188858?

rs190188858 is a single position in the genome, in or near the LINC00540 gene. Published research associates it with ulcer of esophagus (phecode 530.12). A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs190188858 linked to?

On MyGeneLog this position is linked to Ulcer of Esophagus. The research behind each link, and its sources, are set out on that condition page.

Does having rs190188858 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs190188858 come from?

GWAS Catalog, Science (New York, N.Y.) 2024, PMID:39024449. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

Ulcer of esophagus (PheCode 530.12) (rs190188858). MyGeneLog™. https://www.mygenelog.com/variants/rs190188858

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