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Pyogenic granuloma (PheCode 686.4)

CDH4 · rs189587536

Where this position leads

Condition: Pyogenic Granuloma

rs189587536 Condition: Pyogenic Granuloma Pyogenic Granuloma Condition rs189587536 rs189587536 CDH4

What the study found

Who was studied 275 African American or Afro-Caribbean cases, 121,138 African American or Afro-Caribbean controls, 790 European ancestry cases, 448,371 European ancestry controls.

The effect Each copy of the T allele shifted the measure 4.61 lower (95% confidence interval 4.61-4.62); p = 1 × 10−13.

How common The T allele had a frequency of about 100% in the people studied.

Where it sits Chromosome 20, band 20q13.33 — in an intron of CDH4.

What each result means

A/A No copy of the version the research linked to Pyogenic granuloma (PheCode 686.4). This is the starting point the study compared everyone against.
A/T One copy of the version the research linked to Pyogenic granuloma (PheCode 686.4). That is a smaller link than two copies.
T/T Two copies of the version the research linked to Pyogenic granuloma (PheCode 686.4). That is the strongest link of the three results. A link in a study is not a diagnosis.
Source

Questions about rs189587536

What is rs189587536?

rs189587536 is a single position in the genome, in or near the CDH4 gene. Published research associates it with pyogenic granuloma (phecode 686.4). A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs189587536 linked to?

On MyGeneLog this position is linked to Pyogenic Granuloma. The research behind each link, and its sources, are set out on that condition page.

Does having rs189587536 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs189587536 come from?

GWAS Catalog, Science (New York, N.Y.) 2024, PMID:39024449. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

Pyogenic granuloma (PheCode 686.4) (rs189587536). MyGeneLog™. https://www.mygenelog.com/variants/rs189587536

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