Sensitive

Autism spectrum disorder or schizophrenia

HLA-DRB1 · rs142972412

Stands on its own. Nothing else here links to this position yet — but the page above is the point: what the research found, what each genotype means, and where it came from, in language you can read. Links to conditions, drugs and the senses appear automatically if we write them.

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10⁻¹², with 1 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10⁻⁵⁰. 2: ClinVar from one lab (1 star), or p ≤ 10⁻²⁰. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10⁻⁸). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls.

The effect Each copy of the T allele carried 1.09 times the odds of Autism spectrum disorder or schizophrenia (95% confidence interval 1.06-1.12); p = 1 × 10⁻¹².

Where it sits Chromosome 6, band 6p21.32 — between genes, 13.6 kb from HLA-DRB9.

How common each version is

CT

Korean KRGDB

C 37.4% · T 62.6%

Korean Korea4K

C 50.5% · T 49.5%

Japanese ToMMo

C 37.3% · T 62.7%

World gnomAD

C 58.2% · T 41.8%

World 1000 Genomes

C 68.2% · T 31.9%

By ancestry gnomAD

East Asian

C 50.2% · T 49.8%

European (non-Finnish)

C 55.5% · T 44.5%

African / African American

C 65.5% · T 34.5%

South Asian

C 49.4% · T 50.6%

Admixed American (Latino)

C 58.0% · T 42.0%

Middle Eastern

C 70.0% · T 30.0%

Finnish

C 50.5% · T 49.5%

Ashkenazi Jewish

C 65.4% · T 34.6%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study. The ancestry rows are gnomAD's own groups (via Ensembl), as the survey defines them, not races.

What each result means

C/C No copy of the version the research linked to Autism spectrum disorder or schizophrenia. This is the starting point the study compared everyone against.

C/T One copy of the version the research linked to Autism spectrum disorder or schizophrenia. That is a smaller link than two copies.

T/T Two copies of the version the research linked to Autism spectrum disorder or schizophrenia. That is the strongest link of the three results. A link in a study is not a diagnosis.

Source

Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia

Autism Spectrum Disorders Working Group of The Psychiatric Genomics Consortium

Molecular autism · 2017 · PMID 28540026 · open access

Quoting this page

Licensed CC BY-NC 4.0: free to read, share and adapt for non-commercial use, naming MyGeneLog™ and linking the exact page. Commercial use, including training or serving a commercial AI system, needs a licence — https://www.mygenelog.com/license

Autism spectrum disorder or schizophrenia (rs142972412). MyGeneLog™. https://www.mygenelog.com/variants/rs142972412

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