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Variants linked to Epilepsy

Continuously updated · newest added Nov 11, 2026

20,983 positions on this site are linked to Epilepsy, out of 2,512,183 published in total. Each was published only after passing the same quality gate; being on this list is an association, not a diagnosis.

Strength of the evidence: all 2+ 3+ 4 Connections: all only those linked to a condition, drug or sense

← Back to Epilepsy

Sensitive

Cortical dysplasia-focal epilepsy syndrome

CNTNAP2 · rs142980731

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Standard

Developmental and epileptic encephalopathy

SLC25A22 · rs561163386

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Standard

Epilepsy, childhood absence, susceptibility to, 6

CACNA1H · rs747598216

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Sensitive

Cortical dysplasia-focal epilepsy syndrome

CNTNAP2 · rs771772546

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Standard

Epilepsy, early-onset, vitamin B6-dependent

PLPBP · rs201046156

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Standard

Pyridoxine-dependent epilepsy

ALDH7A1 · rs756859037

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Standard

Progressive myoclonic epilepsy

GOSR2 · rs182039780

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Sensitive

Generalized epilepsy-paroxysmal dyskinesia syndrome

KCNMA1 · rs75207686

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Standard

Familial temporal lobe epilepsy 7

RELN · rs199553777

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Standard

Self-limited epilepsy with centrotemporal spikes

ASAH1 · rs147896487

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Standard

EPILEPSY, CHILDHOOD ABSENCE, SUSCEPTIBILITY TO, 2

GABRG2 · rs113085352

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Standard

Pyridoxine-dependent epilepsy

ALDH7A1 · rs368427726

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Standard

Autosomal dominant nocturnal frontal lobe epilepsy 4

CHRNA2 · rs74772771

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Standard

Autosomal dominant nocturnal frontal lobe epilepsy 4

CHRNA2 · rs77710085

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Standard

Familial infantile myoclonic epilepsy

TBC1D24 · rs202162520

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Standard

Autosomal dominant nocturnal frontal lobe epilepsy 3

CHRNB2 · rs55685423

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Sensitive

Cortical dysplasia-focal epilepsy syndrome

CNTNAP2 · rs201219937

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Sensitive

Cortical dysplasia-focal epilepsy syndrome

CNTNAP2 · rs143856702

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Standard

Severe myoclonic epilepsy in infancy

SCN9A · rs141268327

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Standard

Autosomal dominant nocturnal frontal lobe epilepsy 4

CHRNA2 · rs56344740

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Questions about variants on this site

What is a "variant" page on this site?

One specific position in the genome (an rsID), explained in plain language with what published research has found it linked to, and how strong that link actually is.

Where does new variant data come from?

The public GWAS Catalog, checked every twenty minutes, plus variants added manually after research review. Every one passes the same quality gate before publishing.

Does being listed here mean a variant causes a condition?

No. Listing reflects an association from published research, not a diagnosis or a cause. Most common variants shift probability modestly rather than determining an outcome.

Can I search this list by gene or rsID?

Yes — the search box above matches gene symbols and rsIDs as well as trait names.