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Who was studied 47,745 European ancestry individuals.
The effect
Each copy of the G allele shifted the measure 0.0326 higher (95% confidence interval 0.023-0.043); p = 6 × 10−13.
How common The G allele had a frequency of about 27% in the people studied.
Where it sits Chromosome 7, band 7q22.1 — in an intron of CUX1.
What each result means
A/ANo copy of the version the research linked to ENPP2 protein levels. This is the starting point the study compared everyone against.
A/GOne copy of the version the research linked to ENPP2 protein levels. That is a smaller link than two copies.
G/GTwo copies of the version the research linked to ENPP2 protein levels. That is the strongest link of the three results. A link in a study is not a diagnosis.
Nature genetics · 2025 · PMID 39789286 · open access
Questions about rs9690066
What is rs9690066?
rs9690066 is a single position in the genome, in or near the CUX1 gene. Published research associates it with enpp2 protein levels. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.
What conditions is rs9690066 linked to?
On MyGeneLog this position is linked to Celiac Disease. The research behind each link, and its sources, are set out on that condition page.
Does having rs9690066 mean I will get this?
No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.
Where does the information about rs9690066 come from?
GWAS Catalog, Nature genetics 2025, PMID:39789286. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.
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Quoting this page
Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.
ENPP2 protein levels (rs9690066). MyGeneLog™. https://www.mygenelog.com/variants/rs9690066