Sensitive

Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)

HCP5 · rs9469003

Where this position leads

Condition: Drug-Induced Stevens–Johnson Syndrome and Toxic Epidermal Necrolysis

rs9469003 Condition: Drug-Induced Stevens–Johnson Syndrome and Toxic Epidermal Necrolysis Drug-Induced Stevens–Johnson Syndro… Condition rs9469003 rs9469003 HCP5

What the study found

Who was studied 424 European ancestry cases, 1,881 European ancestry controls.

The effect Each copy of the C allele carried 1.73 times the odds of Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN) (95% confidence interval 1.44-2.08); p = 2 × 10−9.

How common The C allele had a frequency of about 15% in the people studied.

Where it sits Chromosome 6, band 6p21.33 — between genes, 1.6 kb from LINC01149.

What each result means

C/C Two copies of the version the research linked to Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN). That is the strongest link of the three results. A link in a study is not a diagnosis.
C/T One copy of the version the research linked to Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN). That is a smaller link than two copies.
T/T No copy of the version the research linked to Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN). This is the starting point the study compared everyone against.
Source

Questions about rs9469003

What is rs9469003?

rs9469003 is a single position in the genome, in or near the HCP5 gene. Published research associates it with drug-induced stevens-johnson syndrome or toxic epidermal necrolysis (sjs/ten). A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs9469003 linked to?

On MyGeneLog this position is linked to Drug-Induced Stevens–Johnson Syndrome and Toxic Epidermal Necrolysis. The research behind each link, and its sources, are set out on that condition page.

Does having rs9469003 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs9469003 come from?

GWAS Catalog, Orphanet J Rare Dis 2011, PMID:21801394. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN) (rs9469003). MyGeneLog™. https://www.mygenelog.com/variants/rs9469003

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