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Ubiquitin carboxyl-terminal hydrolase 25 levels (USP25.9215.117.3)

HLA-DQB1 · rs9273552

Strength of the evidence

2 / 4

Its strongest genetic-study result is p = 10−31, with 1 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 3,301 European ancestry individuals.

The effect Each copy of the A allele shifted the measure 0.62 higher (95% confidence interval 0.52-0.72); p = 2 × 10−31.

How common The A allele had a frequency of about 7% in the people studied.

Where it sits Chromosome 6, band 6p21.32 — in an intron of HLA-DQB1.

What each result means

A/A Two copies of the version the research linked to Ubiquitin carboxyl-terminal hydrolase 25 levels (USP25.9215.117.3). That is the strongest link of the three results. A link in a study is not a diagnosis.
A/G One copy of the version the research linked to Ubiquitin carboxyl-terminal hydrolase 25 levels (USP25.9215.117.3). That is a smaller link than two copies.
G/G No copy of the version the research linked to Ubiquitin carboxyl-terminal hydrolase 25 levels (USP25.9215.117.3). This is the starting point the study compared everyone against.
Source

Questions about rs9273552

What is rs9273552?

rs9273552 is a single position in the genome, in or near the HLA-DQB1 gene. Published research associates it with ubiquitin carboxyl-terminal hydrolase 25 levels (usp25.9215.117.3). A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

Does having rs9273552 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs9273552 come from?

GWAS Catalog, Nature 2018, PMID:29875488. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Licensed CC BY-NC 4.0: free to read, share and adapt for non-commercial use, naming MyGeneLog™ and linking the exact page. Commercial use, including training or serving a commercial AI system, needs a licence — https://www.mygenelog.com/license

Ubiquitin carboxyl-terminal hydrolase 25 levels (USP25.9215.117.3) (rs9273552). MyGeneLog™. https://www.mygenelog.com/variants/rs9273552

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