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HLA DR on myeloid Dendritic Cell

near HLA-DQA1 · rs9271367

Stands on its own. Nothing else here links to this position yet — but the page above is the point: what the research found, what each genotype means, and where it came from, in language you can read. Links to conditions, drugs and the senses appear automatically if we write them.

Strength of the evidence

2 / 4

Its strongest genetic-study result is p = 10−35, with 4 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 2,872 Sardinian (founder/genetic isolate) ancestry individuals.

The effect Each copy of the A allele shifted the measure 0.588 lower (95% confidence interval 0.5-0.68); p = 3 × 10−35.

How common The A allele had a frequency of about 86% in the people studied.

Where it sits Chromosome 6, band 6p21.32 — between genes, 9 kb from HLA-DQA1.

How common each version is

AG
Korean KRGDB
A 77.2% · G 22.8%
Korean Korea4K
A 75.5% · G 24.5%
Korean Korea1K
A 33.5% · G 66.5%
Japanese ToMMo
A 73.1% · G 26.9%
Vietnamese
A 67.0% · G 33.0%
World gnomAD
A 71.6% · G 28.4%
World 1000 Genomes
A 71.5% · G 28.5%
World TOPMed
A 73.3% · G 26.7%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study.

What each result means

A/A Two copies of the version the research linked to HLA DR on myeloid Dendritic Cell. That is the strongest link of the three results. A link in a study is not a diagnosis.
A/G One copy of the version the research linked to HLA DR on myeloid Dendritic Cell. That is a smaller link than two copies.
G/G No copy of the version the research linked to HLA DR on myeloid Dendritic Cell. This is the starting point the study compared everyone against.
Source
Complex genetic signatures in immune cells underlie autoimmunity and inform therapy
Orrù V, Steri M, Sidore C, Marongiu M, Serra V, Olla S, Sole G, Lai S, Dei M, Mulas A, Virdis F, Piras MG
and 16 more — show all
Lobina M, Marongiu M, Pitzalis M, Deidda F, Loizedda A, Onano S, Zoledziewska M, Sawcer S, Devoto M, Gorospe M, Abecasis GR, Floris M, Pala M, Schlessinger D, Fiorillo E, Cucca F
Nature genetics · 2020 · PMID 32929287

Quoting this page

Licensed CC BY-NC 4.0: free to read, share and adapt for non-commercial use, naming MyGeneLog™ and linking the exact page. Commercial use, including training or serving a commercial AI system, needs a licence — https://www.mygenelog.com/license

HLA DR on myeloid Dendritic Cell (rs9271367). MyGeneLog™. https://www.mygenelog.com/variants/rs9271367

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