Standard

Phospholipids to total lipids ratio in large LDL

CHLSN · rs869412

Stands on its own. Nothing else here links to this position yet — but the page above is the point: what the research found, what each genotype means, and where it came from, in language you can read. Links to conditions, drugs and the senses appear automatically if we write them.

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10⁻¹⁵, with 5 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10⁻⁵⁰. 2: ClinVar from one lab (1 star), or p ≤ 10⁻²⁰. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10⁻⁸). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals.

The effect Each copy of the T allele shifted the measure 0.0372 lower (95% confidence interval 0.028-0.046); p = 2 × 10⁻¹⁵.

How common The T allele had a frequency of about 77% in the people studied.

Where it sits Chromosome 7, band 7p22.3 — in an intron of CHLSN.

How common each version is

CT

Korean KRGDB

C 24.6% · T 75.4%

Korean Korea4K

C 24.4% · T 75.6%

Korean Korea1K

C 24.6% · T 75.4%

Japanese ToMMo

C 27.9% · T 72.1%

Vietnamese

C 12.0% · T 88.0%

World gnomAD

C 17.6% · T 82.4%

World 1000 Genomes

C 16.0% · T 84.0%

World TOPMed

C 16.9% · T 83.1%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study.

What each result means

C/C No copy of the version the research linked to Phospholipids to total lipids ratio in large LDL. This is the starting point the study compared everyone against.

C/T One copy of the version the research linked to Phospholipids to total lipids ratio in large LDL. That is a smaller link than two copies.

T/T Two copies of the version the research linked to Phospholipids to total lipids ratio in large LDL. That is the strongest link of the three results. A link in a study is not a diagnosis.

Source

Genome-wide characterization of circulating metabolic biomarkers

Karjalainen MK, Karthikeyan S, Oliver-Williams C, Sliz E, Allara E, Fung WT, Surendran P, Zhang W, Jousilahti P, Kristiansson K, Salomaa V, Goodwin M

and 75 more — show all

Hughes DA, Boehnke M, Fernandes Silva L, Yin X, Mahajan A, Neville MJ, van Zuydam NR, de Mutsert R, Li-Gao R, Mook-Kanamori DO, Demirkan A, Liu J, Noordam R, Trompet S, Chen Z, Kartsonaki C, Li L, Lin K, Hagenbeek FA, Hottenga JJ, Pool R, Ikram MA, van Meurs J, Haller T, Milaneschi Y, Kähönen M, Mishra PP, Joshi PK, Macdonald-Dunlop E, Mangino M, Zierer J, Acar IE, Hoyng CB, Lechanteur YTE, Franke L, Kurilshikov A, Zhernakova A, Beekman M, van den Akker EB, Kolcic I, Polasek O, Rudan I, Gieger C, Waldenberger M, Asselbergs FW, Hayward C, Fu J, den Hollander AI, Menni C, Spector TD, Wilson JF, Lehtimäki T, Raitakari OT, Penninx BWJH, Esko T, Walters RG, Jukema JW, Sattar N, Ghanbari M, Willems van Dijk K, Karpe F, McCarthy MI, Laakso M, Järvelin MR, Timpson NJ, Perola M, Kooner JS, Chambers JC, van Duijn C, Slagboom PE, Boomsma DI, Danesh J, Ala-Korpela M, Butterworth AS, Kettunen J

China Kadoorie Biobank Collaborative Group · Estonian Biobank Research Team · FinnGen

Nature · 2024 · PMID 38448586 · open access

Questions about rs869412

What is rs869412?

rs869412 is a single position in the genome, in or near the CHLSN gene. Published research associates it with phospholipids to total lipids ratio in large ldl. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

Does having rs869412 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs869412 come from?

GWAS Catalog, Nature 2024, PMID:38448586. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Licensed CC BY-NC 4.0: free to read, share and adapt for non-commercial use, naming MyGeneLog™ and linking the exact page. Commercial use, including training or serving a commercial AI system, needs a licence — https://www.mygenelog.com/license

Phospholipids to total lipids ratio in large LDL (rs869412). MyGeneLog™. https://www.mygenelog.com/variants/rs869412

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