Sensitive

Schizophrenia

near NMUR2 · rs79212538

Where this position leads

Condition: Schizophrenia

rs79212538 Condition: Schizophrenia Schizophrenia Condition rs79212538 rs79212538 near NMUR2

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−9, with 2 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls.

The effect Each copy of the T allele carried 1.15 times the odds of Schizophrenia; p = 3 × 10−8.

Where it sits Chromosome 5, band 5q33.1 — between genes, 4.3 kb from TRC-ACA1-1.

How common each version is

GT
World gnomAD
G 97.1% · T 2.9%
World 1000 Genomes
G 99.0% · T 1.0%
World TOPMed
G 97.5% · T 2.5%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study. No Korean figure for this position yet.

What each result means

G/G No copy of the version the research linked to Schizophrenia. This is the starting point the study compared everyone against.
G/T One copy of the version the research linked to Schizophrenia. That is a smaller link than two copies.
T/T Two copies of the version the research linked to Schizophrenia. That is the strongest link of the three results. A link in a study is not a diagnosis.
Source

Questions about rs79212538

What is rs79212538?

rs79212538 is a single position in the genome, in or near the near NMUR2 gene. Published research associates it with schizophrenia. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs79212538 linked to?

On MyGeneLog this position is linked to Schizophrenia. The research behind each link, and its sources, are set out on that condition page.

Does having rs79212538 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs79212538 come from?

GWAS Catalog, Am J Med Genet B Neuropsychiatr Genet 2015, PMID:26198764. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

Schizophrenia (rs79212538). MyGeneLog™. https://www.mygenelog.com/variants/rs79212538

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