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Platelet distribution width

TSPAN9 · rs78278054

Strength of the evidence

2 / 4

Its strongest genetic-study result is p = 10−21, with 4 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 408,112 British individuals.

The effect Each copy of the C allele shifted the measure 0.0465 lower (95% confidence interval 0.037-0.056); p = 1 × 10−21.

How common The C allele had a frequency of about 6% in the people studied.

Where it sits Chromosome 12, band 12p13.32 — in an intron of TSPAN9.

What each result means

C/C Two copies of the version the research linked to Platelet distribution width. That is the strongest link of the three results. A link in a study is not a diagnosis.
C/G One copy of the version the research linked to Platelet distribution width. That is a smaller link than two copies.
G/G No copy of the version the research linked to Platelet distribution width. This is the starting point the study compared everyone against.
Source

Questions about rs78278054

What is rs78278054?

rs78278054 is a single position in the genome, in or near the TSPAN9 gene. Published research associates it with platelet distribution width. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

Does having rs78278054 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs78278054 come from?

GWAS Catalog, Cell 2020, PMID:32888494. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

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Platelet distribution width (rs78278054). MyGeneLog™. https://www.mygenelog.com/variants/rs78278054

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