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Standard

Average diameter for VLDL particles

TAFA2 · rs7296326

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−12, with 2 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 434,646 British ancestry individuals, 8,796 British Central/South Asian individuals, 6,573 British African individuals.

The effect Each copy of the C allele shifted the measure 0.02 nm higher (95% confidence interval 0.02-0.02); p = 2 × 10−12.

Where it sits Chromosome 12, band 12q14.1 — in an intron of TAFA2.

How common each version is

CT
Korean KRGDB
C 2.5% · T 97.5%
Korean Korea4K
C 2.3% · T 97.7%
Korean Korea1K
C 2.2% · T 97.8%
Japanese ToMMo
C 1.9% · T 98.1%
Vietnamese
C 2.4% · T 97.6%
World gnomAD
C 8.6% · T 91.4%
World 1000 Genomes
C 6.0% · T 94.0%
World TOPMed
C 8.6% · T 91.4%

By ancestry gnomAD

East Asian
C 1.8% · T 98.2%
European (non-Finnish)
C 12.3% · T 87.7%
African / African American
C 2.3% · T 97.7%
South Asian
C 9.7% · T 90.3%
Admixed American (Latino)
C 10.6% · T 89.4%
Middle Eastern
C 16.7% · T 83.3%
Finnish
C 8.6% · T 91.4%
Ashkenazi Jewish
C 11.2% · T 88.8%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study. The ancestry rows are gnomAD's own groups (via Ensembl), as the survey defines them, not races.

What each result means

C/C Two copies of the version the research linked to Average diameter for VLDL particles. That is the strongest link of the three results. A link in a study is not a diagnosis.
C/T One copy of the version the research linked to Average diameter for VLDL particles. That is a smaller link than two copies.
T/T No copy of the version the research linked to Average diameter for VLDL particles. This is the starting point the study compared everyone against.
Source

Quoting this page

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Average diameter for VLDL particles (rs7296326). MyGeneLog™. https://www.mygenelog.com/variants/rs7296326

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