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Blood and toenail selenium levels

DMGDH · rs705415

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−9, with 1 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 9,639 European ancestry individuals.

The effect The reported allele is T; the catalogue records no effect size ; p = 5 × 10−10.

How common The T allele had a frequency of about 14% in the people studied.

Where it sits Chromosome 5, band 5q14.1 — between genes, 0.8 kb from DMGDH.

How common each version is

CT
Korean KRGDB
C 91.1% · T 8.9%
Korean Korea4K
C 91.2% · T 8.8%
Korean Korea1K
C 91.3% · T 8.7%
Japanese ToMMo
C 90.5% · T 9.5%
Vietnamese
C 90.7% · T 9.3%
World gnomAD
C 91.7% · T 8.3%
World 1000 Genomes
C 92.2% · T 7.8%
World TOPMed
C 92.1% · T 7.9%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study.

What each result means

C/C No copy of the version the research linked to Blood and toenail selenium levels. This is the starting point the study compared everyone against.
C/T One copy of the version the research linked to Blood and toenail selenium levels. That is a smaller link than two copies.
T/T Two copies of the version the research linked to Blood and toenail selenium levels. That is the strongest link of the three results. A link in a study is not a diagnosis.
Source

Questions about rs705415

What is rs705415?

rs705415 is a single position in the genome, in or near the DMGDH gene. Published research associates it with blood and toenail selenium levels. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

Does having rs705415 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs705415 come from?

GWAS Catalog, Hum Mol Genet 2014, PMID:25343990. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Licensed CC BY-NC 4.0: free to read, share and adapt for non-commercial use, naming MyGeneLog™ and linking the exact page. Commercial use, including training or serving a commercial AI system, needs a licence — https://www.mygenelog.com/license

Blood and toenail selenium levels (rs705415). MyGeneLog™. https://www.mygenelog.com/variants/rs705415

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