Standard

Cholesterol, total

CERT1 · rs6873472

Stands on its own. Nothing else here links to this position yet — but the page above is the point: what the research found, what each genotype means, and where it came from, in language you can read. Links to conditions, drugs and the senses appear automatically if we write them.

Strength of the evidence

3 / 4

Its strongest genetic-study result is p = 10⁻⁷⁵, with 5 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10⁻⁵⁰. 2: ClinVar from one lab (1 star), or p ≤ 10⁻²⁰. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10⁻⁸). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 19,259 British ancestry individuals from 6863 families..

The effect Each copy of the A allele shifted the measure 0.0649 mg/dl higher (95% confidence interval 0.043-0.087); p = 8 × 10⁻⁹.

How common The A allele had a frequency of about 38% in the people studied.

Where it sits Chromosome 5, band 5q13.3 — in an intron of CERT1.

How common each version is

AC

Korean KRGDB

A 53.5% · C 46.5%

Korean Korea4K

A 52.3% · C 47.7%

Korean Korea1K

A 53.2% · C 46.8%

Japanese ToMMo

A 51.7% · C 48.3%

Vietnamese

A 56.1% · C 43.9%

World gnomAD

A 54.5% · C 45.5%

World 1000 Genomes

A 60.8% · C 39.2%

World TOPMed

A 55.3% · C 44.7%

By ancestry gnomAD

East Asian

A 53.0% · C 46.9%

European (non-Finnish)

A 38.8% · C 61.2%

African / African American

A 86.5% · C 13.5%

South Asian

A 58.1% · C 41.9%

Admixed American (Latino)

A 45.4% · C 54.6%

Middle Eastern

A 38.8% · C 61.2%

Finnish

A 44.4% · C 55.6%

Ashkenazi Jewish

A 48.4% · C 51.6%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study. The ancestry rows are gnomAD's own groups (via Ensembl), as the survey defines them, not races.

What each result means

A/A Two copies of the version the research linked to Cholesterol, total. That is the strongest link of the three results. A link in a study is not a diagnosis.

A/C One copy of the version the research linked to Cholesterol, total. That is a smaller link than two copies.

C/C No copy of the version the research linked to Cholesterol, total. This is the starting point the study compared everyone against.

Source

Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants

Nagy R, Boutin TS, Marten J, Huffman JE, Kerr SM, Campbell A, Evenden L, Gibson J, Amador C, Howard DM, Navarro P, Morris A

and 13 more — show all

Deary IJ, Hocking LJ, Padmanabhan S, Smith BH, Joshi P, Wilson JF, Hastie ND, Wright AF, McIntosh AM, Porteous DJ, Haley CS, Vitart V, Hayward C

Genome medicine · 2017 · PMID 28270201 · open access

Quoting this page

Licensed CC BY-NC 4.0: free to read, share and adapt for non-commercial use, naming MyGeneLog™ and linking the exact page. Commercial use, including training or serving a commercial AI system, needs a licence — https://www.mygenelog.com/license

Cholesterol, total (rs6873472). MyGeneLog™. https://www.mygenelog.com/variants/rs6873472

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