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High density lipoprotein cholesterol levels

APOC1 · rs66626994

Stands on its own. Nothing else here links to this position yet — but the page above is the point: what the research found, what each genotype means, and where it came from, in language you can read. Links to conditions, drugs and the senses appear automatically if we write them.

Strength of the evidence

3 / 4

Its strongest genetic-study result is p = 10−222, with 4 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 6,949 Korean ancestry individuals; replicated in 6,000 Korean ancestry individuals.

The effect Each copy of the A allele shifted the measure 0.0396 lower (95% confidence interval 0.027-0.053); p = 2 × 10−9.

How common The A allele had a frequency of about 10% in the people studied.

Where it sits Chromosome 19, band 19q13.32 — between genes, 1 kb from APOC1P1.

How common each version is

AG
Korean KRGDB
A 10.3% · G 89.7%
Korean Korea4K
A 10.4% · G 89.6%
Korean Korea1K
A 10.9% · G 89.1%
Japanese ToMMo
A 10.8% · G 89.2%
World gnomAD
A 14.0% · G 86.0%
World 1000 Genomes
A 10.9% · G 89.1%
World TOPMed
A 12.6% · G 87.4%

By ancestry gnomAD

East Asian
A 10.8% · G 89.2%
European (non-Finnish)
A 14.6% · G 85.4%
African / African American
A 12.6% · G 87.4%
South Asian
A 10.1% · G 89.9%
Admixed American (Latino)
A 8.9% · G 91.1%
Middle Eastern
A 9.2% · G 90.8%
Finnish
A 27.4% · G 72.6%
Ashkenazi Jewish
A 11.5% · G 88.5%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study. The ancestry rows are gnomAD's own groups (via Ensembl), as the survey defines them, not races.

What each result means

A/A Two copies of the version the research linked to High density lipoprotein cholesterol levels. That is the strongest link of the three results. A link in a study is not a diagnosis.
A/G One copy of the version the research linked to High density lipoprotein cholesterol levels. That is a smaller link than two copies.
G/G No copy of the version the research linked to High density lipoprotein cholesterol levels. This is the starting point the study compared everyone against.
Source
The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits
Moon S, Kim YJ, Han S, Hwang MY, Shin DM, Park MY, Lu Y, Yoon K, Jang HM, Kim YK, Park TJ, Song DS
and 3 more — show all
Park JK, Lee JE, Kim BJ
Scientific reports · 2019 · PMID 30718733 · open access

Quoting this page

Licensed CC BY-NC 4.0: free to read, share and adapt for non-commercial use, naming MyGeneLog™ and linking the exact page. Commercial use, including training or serving a commercial AI system, needs a licence — https://www.mygenelog.com/license

High density lipoprotein cholesterol levels (rs66626994). MyGeneLog™. https://www.mygenelog.com/variants/rs66626994

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