Standard
Smoking initiation
LINC01725 · rs6660879
Stands on its own.
Nothing else here links to this position yet — but the page above is the point: what the
research found, what each genotype means, and where it came from, in language you can
read. Links to conditions, drugs and the senses appear automatically if we write them.
What the study found
Who was studied 3,382,012 European ancestry, East Asian ancestry, Hispanic or Latin American, African ancestry individuals.
The effect
Each copy of the T allele shifted the measure 0.00722 lower (95% confidence interval 0.0057-0.0087); p = 3 × 10−20.
How common The T allele had a frequency of about 55% in the people studied.
Where it sits Chromosome 1, band 1p31.1 — in an intron of LINC01725.
What each result means
C/C
Published research associates this genotype with typical/baseline likelihood of Smoking initiation — no copies of the reported risk allele.
C/T
Published research associates this genotype (one copy of the reported risk allele) with an intermediate association with Smoking initiation.
T/T
Published research associates this genotype (two copies of the reported risk allele) with a higher likelihood of Smoking initiation compared to the general population.
Source
Genetic diversity fuels gene discovery for tobacco and alcohol use
Saunders GRB,
Wang X,
Chen F,
Jang SK,
Liu M,
Wang C,
Gao S,
Jiang Y,
Khunsriraksakul C,
Otto JM,
Addison C,
Akiyama M
and 205 more — show all
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Aliev F,
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Oelsner EC,
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Richmond NE,
Roan C,
Rotter JI,
Rueschman MN,
Runarsdottir V,
Saccone NL,
Schwartz DA,
Shadyab AH,
Shi J,
Shringarpure SS,
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Skogholt AH,
Smith JA,
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Sotoodehnia N,
Stallings MC,
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Syed M,
Tal-Singer R,
Taylor AE,
Taylor KD,
Telen MJ,
Thai KK,
Tiwari H,
Turman C,
Tyrfingsson T,
Wall TL,
Walters RG,
Weir DR,
Weiss ST,
White WB,
Whitfield JB,
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Nature · 2022 · PMID 36477530 · open access
Questions about rs6660879
What is rs6660879?
rs6660879 is a single position in the genome, in or near the LINC01725 gene. Published research associates it with smoking initiation. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.
Does having rs6660879 mean I will get this?
No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.
Where does the information about rs6660879 come from?
GWAS Catalog, Nature 2022, PMID:36477530. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.
Quoting this page
Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.
Smoking initiation (rs6660879). MyGeneLog™. https://www.mygenelog.com/variants/rs6660879
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