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VIT protein levels

VIT · rs57817021

Strength of the evidence

3 / 4

Its strongest genetic-study result is p = 10−158, with 1 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 47,745 European ancestry individuals.

The effect Each copy of the T allele shifted the measure 0.365 lower (95% confidence interval 0.34-0.39); p = 2 × 10−158.

How common The T allele had a frequency of about 4% in the people studied.

Where it sits Chromosome 2, band 2p22.2 — in an intron of VIT.

How common each version is

CT
Korean KRGDB
C 82.6% · T 17.4%
Korean Korea4K
C 83.7% · T 16.3%
Japanese ToMMo
C 87.0% · T 13.0%
Vietnamese
C 83.5% · T 16.5%
World gnomAD
C 91.1% · T 8.9%
World 1000 Genomes
C 85.1% · T 14.9%
World TOPMed
C 91.1% · T 8.9%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study.

What each result means

C/C No copy of the version the research linked to VIT protein levels. This is the starting point the study compared everyone against.
C/T One copy of the version the research linked to VIT protein levels. That is a smaller link than two copies.
T/T Two copies of the version the research linked to VIT protein levels. That is the strongest link of the three results. A link in a study is not a diagnosis.
Source

Quoting this page

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VIT protein levels (rs57817021). MyGeneLog™. https://www.mygenelog.com/variants/rs57817021

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