Gene Knowledge Graph
UTC
Sensitive

Cancer of bladder (PheCode 189.2)

near APOBEC3A · rs5750711

Where this position leads

Condition: Bladder Cancer

rs5750711 Condition: Bladder Cancer Bladder Cancer Condition rs5750711 rs5750711 near APOBEC3A

What the study found

Who was studied 11,744 European ancestry cases, 436,406 European ancestry controls.

The effect Each copy of the T allele shifted the measure 0.135 higher (95% confidence interval 0.11-0.16); p = 2 × 10−20.

How common The T allele had a frequency of about 65% in the people studied.

Where it sits Chromosome 22, band 22q13.1 — between genes, 6.8 kb from APOBEC3A.

What each result means

C/C No copy of the version the research linked to Cancer of bladder (PheCode 189.2). This is the starting point the study compared everyone against.
C/T One copy of the version the research linked to Cancer of bladder (PheCode 189.2). That is a smaller link than two copies.
T/T Two copies of the version the research linked to Cancer of bladder (PheCode 189.2). That is the strongest link of the three results. A link in a study is not a diagnosis.
Source
Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program
Verma A, Huffman JE, Rodriguez A, Conery M, Liu M, Ho YL, Kim Y, Heise DA, Guare L, Panickan VA, Garcon H, Linares F
and 59 more — show all
Costa L, Goethert I, Tipton R, Honerlaw J, Davies L, Whitbourne S, Cohen J, Posner DC, Sangar R, Murray M, Wang X, Dochtermann DR, Devineni P, Shi Y, Nandi TN, Assimes TL, Brunette CA, Carroll RJ, Clifford R, Duvall S, Gelernter J, Hung A, Iyengar SK, Joseph J, Kember R, Kranzler H, Kripke CM, Levey D, Luoh SW, Merritt VC, Overstreet C, Deak JD, Grant SFA, Polimanti R, Roussos P, Shakt G, Sun YV, Tsao N, Venkatesh S, Voloudakis G, Justice A, Begoli E, Ramoni R, Tourassi G, Pyarajan S, Tsao P, O'Donnell CJ, Muralidhar S, Moser J, Casas JP, Bick AG, Zhou W, Cai T, Voight BF, Cho K, Gaziano JM, Madduri RK, Damrauer S, Liao KP
Science (New York, N.Y.) · 2024 · PMID 39024449 · open access

Questions about rs5750711

What is rs5750711?

rs5750711 is a single position in the genome, in or near the near APOBEC3A gene. Published research associates it with cancer of bladder (phecode 189.2). A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs5750711 linked to?

On MyGeneLog this position is linked to Bladder Cancer. The research behind each link, and its sources, are set out on that condition page.

Does having rs5750711 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs5750711 come from?

GWAS Catalog, Science (New York, N.Y.) 2024, PMID:39024449. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

Cancer of bladder (PheCode 189.2) (rs5750711). MyGeneLog™. https://www.mygenelog.com/variants/rs5750711

← See all variants