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Sensitive

Type 1 diabetes with ophthalmic manifestations (PheCode 250.13)

near RN7SKP284 · rs569848643

Where this position leads

Condition: Type 1 Diabetes

rs569848643 Condition: Type 1 Diabetes Type 1 Diabetes Condition rs569848643 rs569848643 near RN7SKP2…

What the study found

Who was studied 738 African American or Afro-Caribbean cases, 119,755 African American or Afro-Caribbean controls, 2,517 European ancestry cases, 445,450 European ancestry controls, 314 Hispanic or Latin American cases, 59,045 Hispanic or Latin American controls.

The effect Each copy of the C allele shifted the measure 2.25 lower (95% confidence interval 2.2-2.3); p = 8 × 10−12.

How common The C allele had a frequency of about 100% in the people studied.

Where it sits Chromosome 3, band 3p12.1 — between genes, 50.2 kb from RN7SKP284.

What each result means

A/A No copy of the version the research linked to Type 1 diabetes with ophthalmic manifestations (PheCode 250.13). This is the starting point the study compared everyone against.
A/C One copy of the version the research linked to Type 1 diabetes with ophthalmic manifestations (PheCode 250.13). That is a smaller link than two copies.
C/C Two copies of the version the research linked to Type 1 diabetes with ophthalmic manifestations (PheCode 250.13). That is the strongest link of the three results. A link in a study is not a diagnosis.
Source
Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program
Verma A, Huffman JE, Rodriguez A, Conery M, Liu M, Ho YL, Kim Y, Heise DA, Guare L, Panickan VA, Garcon H, Linares F
and 59 more — show all
Costa L, Goethert I, Tipton R, Honerlaw J, Davies L, Whitbourne S, Cohen J, Posner DC, Sangar R, Murray M, Wang X, Dochtermann DR, Devineni P, Shi Y, Nandi TN, Assimes TL, Brunette CA, Carroll RJ, Clifford R, Duvall S, Gelernter J, Hung A, Iyengar SK, Joseph J, Kember R, Kranzler H, Kripke CM, Levey D, Luoh SW, Merritt VC, Overstreet C, Deak JD, Grant SFA, Polimanti R, Roussos P, Shakt G, Sun YV, Tsao N, Venkatesh S, Voloudakis G, Justice A, Begoli E, Ramoni R, Tourassi G, Pyarajan S, Tsao P, O'Donnell CJ, Muralidhar S, Moser J, Casas JP, Bick AG, Zhou W, Cai T, Voight BF, Cho K, Gaziano JM, Madduri RK, Damrauer S, Liao KP
Science (New York, N.Y.) · 2024 · PMID 39024449 · open access

Questions about rs569848643

What is rs569848643?

rs569848643 is a single position in the genome, in or near the near RN7SKP284 gene. Published research associates it with type 1 diabetes with ophthalmic manifestations (phecode 250.13). A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs569848643 linked to?

On MyGeneLog this position is linked to Type 1 Diabetes. The research behind each link, and its sources, are set out on that condition page.

Does having rs569848643 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs569848643 come from?

GWAS Catalog, Science (New York, N.Y.) 2024, PMID:39024449. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

Type 1 diabetes with ophthalmic manifestations (PheCode 250.13) (rs569848643). MyGeneLog™. https://www.mygenelog.com/variants/rs569848643

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