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GLIPR1 protein levels

near TMED7 · rs563090161

Where this position leads

Condition: Celiac Disease

rs563090161 Condition: Celiac Disease Celiac Disease Condition rs563090161 rs563090161 near TMED7

What the study found

Who was studied 47,745 European ancestry individuals.

The effect Each copy of the C allele shifted the measure 0.916 higher (95% confidence interval 0.71-1.12); p = 3 × 10−20.

How common The C allele had a frequency of about 0% in the people studied.

Where it sits Chromosome 5, band 5q22.3 — between genes, 29.1 kb from TMED7.

What each result means

C/C Published research associates this genotype (two copies of the reported risk allele) with a higher likelihood of GLIPR1 protein levels compared to the general population.
C/T Published research associates this genotype (one copy of the reported risk allele) with an intermediate association with GLIPR1 protein levels.
T/T Published research associates this genotype with typical/baseline likelihood of GLIPR1 protein levels — no copies of the reported risk allele.
Source
A scalable variational inference approach for increased mixed-model association power
Loya H, Kalantzis G, Cooper F, Palamara PF
Nature genetics · 2025 · PMID 39789286 · open access

Questions about rs563090161

What is rs563090161?

rs563090161 is a single position in the genome, in or near the near TMED7 gene. Published research associates it with glipr1 protein levels. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs563090161 linked to?

On MyGeneLog this position is linked to Celiac Disease. The research behind each link, and its sources, are set out on that condition page.

Does having rs563090161 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs563090161 come from?

GWAS Catalog, Nature genetics 2025, PMID:39789286. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

GLIPR1 protein levels (rs563090161). MyGeneLog™. https://www.mygenelog.com/variants/rs563090161

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