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Sensitive

Hepatocellular carcinoma in hepatitis B infection

FAM114A1 · rs55718051

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−10, with 1 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 1,036 Southern Chinese ancestry cases, 1,215 Southern Chinese ancestry controls; replicated in 1,377 East Asian ancestry cases, 1,579 East Asian ancestry controls.

The effect Each copy of the G allele carried 0.73 times the odds of Hepatocellular carcinoma in hepatitis B infection (95% confidence interval 0.67-0.8); p = 9 × 10−11.

Where it sits Chromosome 4, band 4p14 — in an intron of FAM114A1.

How common each version is

AG
Korean KRGDB
A 58.7% · G 41.3%
Korean Korea4K
A 58.9% · G 41.1%
Korean Korea1K
A 58.5% · G 41.5%
Japanese ToMMo
A 59.5% · G 40.5%
Vietnamese
A 75.7% · G 24.3%
World gnomAD
A 58.6% · G 41.4%
World 1000 Genomes
A 63.8% · G 36.2%
World TOPMed
A 59.8% · G 40.2%

By ancestry gnomAD

East Asian
A 64.3% · G 35.7%
European (non-Finnish)
A 52.2% · G 47.8%
African / African American
A 65.8% · G 34.2%
South Asian
A 62.7% · G 37.3%
Admixed American (Latino)
A 69.3% · G 30.7%
Middle Eastern
A 49.7% · G 50.3%
Finnish
A 53.9% · G 46.1%
Ashkenazi Jewish
A 50.9% · G 49.1%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study. The ancestry rows are gnomAD's own groups (via Ensembl), as the survey defines them, not races.

What each result means

A/A No copy of the version the research linked to Hepatocellular carcinoma in hepatitis B infection. This is the starting point the study compared everyone against.
A/G One copy of the version the research linked to Hepatocellular carcinoma in hepatitis B infection. That is a smaller link than two copies.
G/G Two copies of the version the research linked to Hepatocellular carcinoma in hepatitis B infection. That is the strongest link of the three results. A link in a study is not a diagnosis.
Source

Quoting this page

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Hepatocellular carcinoma in hepatitis B infection (rs55718051). MyGeneLog™. https://www.mygenelog.com/variants/rs55718051

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