SHANK2 · rs55678639
Stands on its own. Nothing else here links to this position yet — but the page above is the point: what the research found, what each genotype means, and where it came from, in language you can read. Links to conditions, drugs and the senses appear automatically if we write them.
What the study found
Who was studied 10,708 European ancestry individuals.
The effect Each copy of the A allele shifted the measure 0.098 higher (95% confidence interval 0.071-0.125); p = 3 × 10−13.
How common The A allele had a frequency of about 65% in the people studied.
Where it sits Chromosome 11, band 11q13.3 — in the 3′ untranslated region of SHANK2.
What ClinVar records
Classification
Likely benign; criteria provided, single submitter (1 of 4 stars, 1 submitter).
ClinVar record 305889 NM_012309.5(SHANK2):c.*2583T>C
What this is ClinVar's aggregate record for this position (as of its 2026-10-19 release), not a result about you. A classification describes the variant against the condition named, as laboratories submitted it. Whether a person carries this variant, and what that would mean for them, is a question for a clinical test and a genetic counsellor.
rs55678639 is a single position in the genome, in or near the SHANK2 gene. Published research associates it with liprin-alpha-1 levels. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.
No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.
GWAS Catalog, Science (New York, N.Y.) 2021, PMID:34648354. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.
Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.
Liprin-alpha-1 levels (rs55678639). MyGeneLog™. https://www.mygenelog.com/variants/rs55678639