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PXN protein levels

GCN1 · rs555994863

Where this position leads

Condition: Celiac Disease

rs555994863 Condition: Celiac Disease Celiac Disease Condition rs555994863 rs555994863 GCN1

What the study found

Who was studied 47,745 European ancestry individuals.

The effect Each copy of the T allele shifted the measure 0.51 lower (95% confidence interval 0.47-0.55); p = 3 × 10−143.

How common The T allele had a frequency of about 2% in the people studied.

Where it sits Chromosome 12, band 12q24.23 — in an intron of GCN1.

What each result means

C/C No copy of the version the research linked to PXN protein levels. This is the starting point the study compared everyone against.
C/T One copy of the version the research linked to PXN protein levels. That is a smaller link than two copies.
T/T Two copies of the version the research linked to PXN protein levels. That is the strongest link of the three results. A link in a study is not a diagnosis.
Source

Questions about rs555994863

What is rs555994863?

rs555994863 is a single position in the genome, in or near the GCN1 gene. Published research associates it with pxn protein levels. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs555994863 linked to?

On MyGeneLog this position is linked to Celiac Disease. The research behind each link, and its sources, are set out on that condition page.

Does having rs555994863 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs555994863 come from?

GWAS Catalog, Nature genetics 2025, PMID:39789286. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

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PXN protein levels (rs555994863). MyGeneLog™. https://www.mygenelog.com/variants/rs555994863

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