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Pernicious anemia (PheCode 281.11)

near LGR6 · rs541051646

Where this position leads

Condition: Pernicious Anemia

rs541051646 Condition: Pernicious Anemia Pernicious Anemia Condition rs541051646 rs541051646 near LGR6

What the study found

Who was studied 211 African American or Afro-Caribbean cases, 121,521 African American or Afro-Caribbean controls, 1,218 European ancestry cases, 449,047 European ancestry controls.

The effect Each copy of the C allele shifted the measure 4.58 lower (95% confidence interval 4.57-4.59); p = 5 × 10−12.

How common The C allele had a frequency of about 100% in the people studied.

Where it sits Chromosome 1, band 1q32.1 — between genes, 1.5 kb from LGR6.

What each result means

C/C Two copies of the version the research linked to Pernicious anemia (PheCode 281.11). That is the strongest link of the three results. A link in a study is not a diagnosis.
C/T One copy of the version the research linked to Pernicious anemia (PheCode 281.11). That is a smaller link than two copies.
T/T No copy of the version the research linked to Pernicious anemia (PheCode 281.11). This is the starting point the study compared everyone against.
Source

Questions about rs541051646

What is rs541051646?

rs541051646 is a single position in the genome, in or near the near LGR6 gene. Published research associates it with pernicious anemia (phecode 281.11). A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs541051646 linked to?

On MyGeneLog this position is linked to Pernicious Anemia. The research behind each link, and its sources, are set out on that condition page.

Does having rs541051646 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs541051646 come from?

GWAS Catalog, Science (New York, N.Y.) 2024, PMID:39024449. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

Pernicious anemia (PheCode 281.11) (rs541051646). MyGeneLog™. https://www.mygenelog.com/variants/rs541051646

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