Standard

DKK3 protein levels

near FCGR2B · rs539657009

Where this position leads

Condition: Celiac Disease

rs539657009 Condition: Celiac Disease Celiac Disease Condition rs539657009 rs539657009 near FCGR2B

What the study found

Who was studied 47,745 European ancestry individuals.

The effect Each copy of the T allele shifted the measure 0.0909 higher (95% confidence interval 0.075-0.107); p = 2 × 10−32.

How common The T allele had a frequency of about 13% in the people studied.

Where it sits Chromosome 1, band 1q23.3 — between genes, 4.1 kb from FCGR2B.

What each result means

C/C No copy of the version the research linked to DKK3 protein levels. This is the starting point the study compared everyone against.
C/T One copy of the version the research linked to DKK3 protein levels. That is a smaller link than two copies.
T/T Two copies of the version the research linked to DKK3 protein levels. That is the strongest link of the three results. A link in a study is not a diagnosis.
Source

Questions about rs539657009

What is rs539657009?

rs539657009 is a single position in the genome, in or near the near FCGR2B gene. Published research associates it with dkk3 protein levels. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs539657009 linked to?

On MyGeneLog this position is linked to Celiac Disease. The research behind each link, and its sources, are set out on that condition page.

Does having rs539657009 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs539657009 come from?

GWAS Catalog, Nature genetics 2025, PMID:39789286. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

DKK3 protein levels (rs539657009). MyGeneLog™. https://www.mygenelog.com/variants/rs539657009

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