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Serum 25-Hydroxyvitamin D levels

near SLC4A4 · rs528776789

Strength of the evidence

2 / 4

Its strongest genetic-study result is p = 10−30, with 1 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 443,734 European ancestry individuals.

The effect Each copy of the A allele shifted the measure 0.178 higher (95% confidence interval 0.15-0.21); p = 4 × 10−31.

How common The A allele had a frequency of about 99% in the people studied.

Where it sits Chromosome 4, band 4q13.3 — between genes, 48.3 kb from SLC4A4.

What each result means

A/A Two copies of the version the research linked to Serum 25-Hydroxyvitamin D levels. That is the strongest link of the three results. A link in a study is not a diagnosis.
A/G One copy of the version the research linked to Serum 25-Hydroxyvitamin D levels. That is a smaller link than two copies.
G/G No copy of the version the research linked to Serum 25-Hydroxyvitamin D levels. This is the starting point the study compared everyone against.
Source

Questions about rs528776789

What is rs528776789?

rs528776789 is a single position in the genome, in or near the near SLC4A4 gene. Published research associates it with serum 25-hydroxyvitamin d levels. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

Does having rs528776789 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs528776789 come from?

GWAS Catalog, American journal of human genetics 2020, PMID:32059762. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Licensed CC BY-NC 4.0: free to read, share and adapt for non-commercial use, naming MyGeneLog™ and linking the exact page. Commercial use, including training or serving a commercial AI system, needs a licence — https://www.mygenelog.com/license

Serum 25-Hydroxyvitamin D levels (rs528776789). MyGeneLog™. https://www.mygenelog.com/variants/rs528776789

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