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Standard

Free Cholesterol to Total Lipids in Very Large HDL percentage

IRAG1 · rs4910165

Strength of the evidence

3 / 4

Its strongest genetic-study result is p = 10−53, with 14 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 434,646 British ancestry individuals, 8,796 British Central/South Asian individuals, 6,573 British African individuals.

The effect Each copy of the G allele shifted the measure 0.01 % lower (95% confidence interval 0.01-0.01); p = 3 × 10−11.

Where it sits Chromosome 11, band 11p15.4 — in an intron of IRAG1.

How common each version is

CG
Korean KRGDB
C 0.7% · G 99.4%
Korean Korea4K
C 0.7% · G 99.3%
Korean Korea1K
C 0.7% · G 99.3%
Japanese ToMMo
C 0.3% · G 99.7%
Vietnamese
C 2.8% · G 97.2%
World gnomAD
C 22.0% · G 78.0%
World 1000 Genomes
C 12.5% · G 87.5%
World TOPMed
C 20.7% · G 79.3%

By ancestry gnomAD

East Asian
C 2.1% · G 97.9%
European (non-Finnish)
C 31.8% · G 68.2%
African / African American
C 5.5% · G 94.5%
South Asian
C 15.2% · G 84.8%
Admixed American (Latino)
C 21.3% · G 78.7%
Middle Eastern
C 34.0% · G 66.0%
Finnish
C 32.8% · G 67.2%
Ashkenazi Jewish
C 34.1% · G 66.0%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study. The ancestry rows are gnomAD's own groups (via Ensembl), as the survey defines them, not races.

What each result means

C/C No copy of the version the research linked to Free Cholesterol to Total Lipids in Very Large HDL percentage. This is the starting point the study compared everyone against.
C/G One copy of the version the research linked to Free Cholesterol to Total Lipids in Very Large HDL percentage. That is a smaller link than two copies.
G/G Two copies of the version the research linked to Free Cholesterol to Total Lipids in Very Large HDL percentage. That is the strongest link of the three results. A link in a study is not a diagnosis.
Source

Quoting this page

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Free Cholesterol to Total Lipids in Very Large HDL percentage (rs4910165). MyGeneLog™. https://www.mygenelog.com/variants/rs4910165

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