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Standard

Monocyte count

XPO6 · rs4788046

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−13, with 3 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 521,594 European ancestry individuals.

The effect Each copy of the A allele shifted the measure 0.0156 SD unit lower (95% confidence interval 0.012-0.02); p = 6 × 10−14.

How common The A allele had a frequency of about 29% in the people studied.

Where it sits Chromosome 16, band 16p12.1 — in an intron of XPO6.

How common each version is

AG
Korean KRGDB
A 5.1% · G 94.9%
Korean Korea4K
A 5.1% · G 94.9%
Korean Korea1K
A 6.1% · G 93.9%
Japanese ToMMo
A 5.4% · G 94.6%
Vietnamese
A 20.6% · G 79.4%
World gnomAD
A 28.9% · G 71.1%
World 1000 Genomes
A 22.2% · G 77.8%
World TOPMed
A 29.4% · G 70.5%

By ancestry gnomAD

East Asian
A 10.7% · G 89.3%
European (non-Finnish)
A 30.0% · G 70.0%
African / African American
A 32.0% · G 68.0%
South Asian
A 13.1% · G 86.9%
Admixed American (Latino)
A 25.6% · G 74.4%
Middle Eastern
A 33.6% · G 66.4%
Finnish
A 29.2% · G 70.8%
Ashkenazi Jewish
A 33.7% · G 66.3%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study. The ancestry rows are gnomAD's own groups (via Ensembl), as the survey defines them, not races.

What each result means

A/A Two copies of the version the research linked to Monocyte count. That is the strongest link of the three results. A link in a study is not a diagnosis.
A/G One copy of the version the research linked to Monocyte count. That is a smaller link than two copies.
G/G No copy of the version the research linked to Monocyte count. This is the starting point the study compared everyone against.
Source

Quoting this page

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Monocyte count (rs4788046). MyGeneLog™. https://www.mygenelog.com/variants/rs4788046

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