Sensitive

Major depressive disorder

LINC03000 · rs4543289

Where this position leads

Condition: Major Depressive Disorder

rs4543289 Condition: Major Depressive Disorder Major Depressive Disorder Condition rs4543289 rs4543289 LINC03000

What the study found

Who was studied 84,847 European ancestry cases, 241,266 European ancestry controls; replicated in 45,773 European ancestry cases, 106,354 European ancestry controls.

The effect Each copy of the T allele shifted the measure 0.0322 lower (95% confidence interval 0.02-0.044); p = 1 × 10−8.

How common The T allele had a frequency of about 48% in the people studied.

Where it sits Chromosome 5, band 5q34 — in an intron of LINC03000.

What each result means

G/G No copy of the version the research linked to Major depressive disorder. This is the starting point the study compared everyone against.
G/T One copy of the version the research linked to Major depressive disorder. That is a smaller link than two copies.
T/T Two copies of the version the research linked to Major depressive disorder. That is the strongest link of the three results. A link in a study is not a diagnosis.
Source

Questions about rs4543289

What is rs4543289?

rs4543289 is a single position in the genome, in or near the LINC03000 gene. Published research associates it with major depressive disorder. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs4543289 linked to?

On MyGeneLog this position is linked to Major Depressive Disorder. The research behind each link, and its sources, are set out on that condition page.

Does having rs4543289 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs4543289 come from?

GWAS Catalog, Nature genetics 2016, PMID:27479909. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

Major depressive disorder (rs4543289). MyGeneLog™. https://www.mygenelog.com/variants/rs4543289

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