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Who was studied 394,642 European ancestry individuals.
The effect
Each copy of the T allele shifted the measure 0.00971 lower (95% confidence interval 0.0074-0.012); p = 1 × 10−19.
How common The T allele had a frequency of about 59% in the people studied.
Where it sits Chromosome 12, band 12p12.3 — in an intron of H2AJ.
What each result means
G/GNo copy of the version the research linked to Standing height (UKB data field 50). This is the starting point the study compared everyone against.
G/TOne copy of the version the research linked to Standing height (UKB data field 50). That is a smaller link than two copies.
T/TTwo copies of the version the research linked to Standing height (UKB data field 50). That is the strongest link of the three results. A link in a study is not a diagnosis.
Nature genetics · 2025 · PMID 39789286 · open access
Questions about rs3789999
What is rs3789999?
rs3789999 is a single position in the genome, in or near the H2AJ gene. Published research associates it with standing height (ukb data field 50). A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.
What conditions is rs3789999 linked to?
On MyGeneLog this position is linked to Height. The research behind each link, and its sources, are set out on that condition page.
Does having rs3789999 mean I will get this?
No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.
Where does the information about rs3789999 come from?
GWAS Catalog, Nature genetics 2025, PMID:39789286. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.
0 132326Reads by AI crawlersClaude0ChatGPT0Google · Gemini0Perplexity0Meta AI0Microsoft · Copilot0Amazon2Apple3China (ByteDance, Huawei, Baidu…)2ByteDance (Doubao)2Others6Total13Counted by the name each crawler declares; requests found to be impersonating one are left out. Google · Gemini includes Googlebot, the search crawler whose index Google also uses for its AI features. Other search engines and bots are under Others.
Quoting this page
Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.
Standing height (UKB data field 50) (rs3789999). MyGeneLog™. https://www.mygenelog.com/variants/rs3789999