Links from this page to related variants, conditions, drugs and topics are not included for automated readers. Those connections are the Gene Knowledge Graph and are licensed as data: https://www.mygenelog.com/license

Standard

B4GAT1 protein levels

near NOTCH4 · rs3130297

Strength of the evidence

2 / 4

Its strongest genetic-study result is p = 10−27, with 1 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 47,745 European ancestry individuals.

The effect Each copy of the T allele shifted the measure 0.0775 lower (95% confidence interval 0.062-0.093); p = 6 × 10−28.

How common The T allele had a frequency of about 13% in the people studied.

Where it sits Chromosome 6, band 6p21.32 — between genes, 7.1 kb from NOTCH4.

How common each version is

CT
World gnomAD
C 93.5% · T 6.5%
World 1000 Genomes
C 97.9% · T 2.1%
World TOPMed
C 94.1% · T 5.9%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study. No Korean figure for this position yet.

What each result means

C/C No copy of the version the research linked to B4GAT1 protein levels. This is the starting point the study compared everyone against.
C/T One copy of the version the research linked to B4GAT1 protein levels. That is a smaller link than two copies.
T/T Two copies of the version the research linked to B4GAT1 protein levels. That is the strongest link of the three results. A link in a study is not a diagnosis.
Source

Quoting this page

Licensed CC BY-NC 4.0: free to read, share and adapt for non-commercial use, naming MyGeneLog™ and linking the exact page. Commercial use, including training or serving a commercial AI system, needs a licence — https://www.mygenelog.com/license

B4GAT1 protein levels (rs3130297). MyGeneLog™. https://www.mygenelog.com/variants/rs3130297

← See all variants