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Standard

height (minimum, inv-normal transformed)

WNT5A · rs2682456

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−11, with 2 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 119,012 African American or Afro-Caribbean individuals, 57,810 Hispanic or Latin American individuals, 6,384 East Asian ancestry individuals, 424,306 European ancestry individuals.

The effect Each copy of the C allele shifted the measure 0.0252 higher (95% confidence interval 0.018-0.032); p = 5 × 10−12.

How common The C allele had a frequency of about 43% in the people studied.

Where it sits Chromosome 3, band 3p14.3 — in an intron of WNT5A.

How common each version is

CT
Korean KRGDB
C 67.3% · T 32.7%
Korean Korea4K
C 67.7% · T 32.3%
Korean Korea1K
C 67.0% · T 33.0%
Japanese ToMMo
C 70.3% · T 29.6%
Vietnamese
C 69.5% · T 30.5%
World gnomAD
C 41.3% · T 58.7%
World 1000 Genomes
C 45.0% · T 55.0%
World TOPMed
C 42.0% · T 58.0%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study.

What each result means

C/C Two copies of the version the research linked to height (minimum, inv-normal transformed). That is the strongest link of the three results. A link in a study is not a diagnosis.
C/T One copy of the version the research linked to height (minimum, inv-normal transformed). That is a smaller link than two copies.
T/T No copy of the version the research linked to height (minimum, inv-normal transformed). This is the starting point the study compared everyone against.
Source

Quoting this page

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height (minimum, inv-normal transformed) (rs2682456). MyGeneLog™. https://www.mygenelog.com/variants/rs2682456

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