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VMP1 · rs2453913
Stands on its own. Nothing else here links to this position yet — but the page above is the point: what the research found, what each genotype means, and where it came from, in language you can read. Links to conditions, drugs and the senses appear automatically if we write them.
Strength of the evidence
Its strongest genetic-study result is p = 10−10, with 1 associations in the GWAS Catalog.
4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.
What the study found
Who was studied 434,646 British ancestry individuals, 8,796 British Central/South Asian individuals, 6,573 British African individuals.
The effect Each copy of the T allele shifted the measure 0.01 % lower (95% confidence interval 0.01-0.01); p = 1 × 10−10.
Where it sits Chromosome 17, band 17q23.1 — in an intron of VMP1.
How common each version is
GT
G 37.0% · T 63.0%
G 36.7% · T 63.3%
G 37.2% · T 62.8%
G 40.5% · T 59.5%
G 55.9% · T 44.1%
G 47.1% · T 52.9%
G 55.0% · T 45.0%
By ancestry gnomAD
G 45.1% · T 54.9%
G 70.3% · T 29.7%
G 28.2% · T 71.8%
G 53.5% · T 46.5%
G 62.1% · T 37.9%
G 54.1% · T 45.9%
G 64.7% · T 35.3%
G 69.2% · T 30.8%
The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study. The ancestry rows are gnomAD's own groups (via Ensembl), as the survey defines them, not races.
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Free Cholesterol to Total Lipids in Chylomicrons and Extremely Large VLDL percentage (rs2453913). MyGeneLog™. https://www.mygenelog.com/variants/rs2453913