Standard

SMPD1 protein levels

near CAVIN3 · rs2306898

Where this position leads

Condition: Celiac Disease

rs2306898 Condition: Celiac Disease Celiac Disease Condition rs2306898 rs2306898 near CAVIN3

What the study found

Who was studied 47,745 European ancestry individuals.

The effect Each copy of the A allele shifted the measure 0.163 higher (95% confidence interval 0.12-0.21); p = 5 × 10−13.

How common The A allele had a frequency of about 1% in the people studied.

Where it sits Chromosome 11, band 11p15.4 — between genes, 24.1 kb from CAVIN3.

What each result means

A/A Two copies of the version the research linked to SMPD1 protein levels. That is the strongest link of the three results. A link in a study is not a diagnosis.
A/G One copy of the version the research linked to SMPD1 protein levels. That is a smaller link than two copies.
G/G No copy of the version the research linked to SMPD1 protein levels. This is the starting point the study compared everyone against.
Source

Questions about rs2306898

What is rs2306898?

rs2306898 is a single position in the genome, in or near the near CAVIN3 gene. Published research associates it with smpd1 protein levels. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs2306898 linked to?

On MyGeneLog this position is linked to Celiac Disease. The research behind each link, and its sources, are set out on that condition page.

Does having rs2306898 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs2306898 come from?

GWAS Catalog, Nature genetics 2025, PMID:39789286. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

SMPD1 protein levels (rs2306898). MyGeneLog™. https://www.mygenelog.com/variants/rs2306898

← See all variants