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Lymphocyte count

ADGRL4 · rs2275902

Where this position leads

Condition: Blood Cell Counts

rs2275902 Condition: Blood Cell Counts Blood Cell Counts Condition rs2275902 rs2275902 ADGRL4

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−14, with 7 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 524,923 European ancestry individuals.

The effect Each copy of the C allele shifted the measure 0.0161 SD unit lower (95% confidence interval 0.012-0.02); p = 5 × 10−15.

How common The C allele had a frequency of about 30% in the people studied.

Where it sits Chromosome 1, band 1p31.1 — a missense change in ADGRL4.

How common each version is

CG
Korean KRGDB
C 22.2% · G 77.8%
Korean Korea4K
C 20.3% · G 79.7%
Korean Korea1K
C 21.2% · G 78.8%
Japanese ToMMo
C 24.4% · G 75.6%
Vietnamese
C 19.7% · G 80.3%
World gnomAD
C 27.9% · G 72.1%
World 1000 Genomes
C 25.3% · G 74.7%
World TOPMed
C 27.7% · G 72.4%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study.

What each result means

C/C Two copies of the version the research linked to Lymphocyte count. That is the strongest link of the three results. A link in a study is not a diagnosis.
C/G One copy of the version the research linked to Lymphocyte count. That is a smaller link than two copies.
G/G No copy of the version the research linked to Lymphocyte count. This is the starting point the study compared everyone against.
Source

Questions about rs2275902

What is rs2275902?

rs2275902 is a single position in the genome, in or near the ADGRL4 gene. Published research associates it with lymphocyte count. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs2275902 linked to?

On MyGeneLog this position is linked to Blood Cell Counts. The research behind each link, and its sources, are set out on that condition page.

Does having rs2275902 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs2275902 come from?

GWAS Catalog, Cell 2020, PMID:32888493. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Licensed CC BY-NC 4.0: free to read, share and adapt for non-commercial use, naming MyGeneLog™ and linking the exact page. Commercial use, including training or serving a commercial AI system, needs a licence — https://www.mygenelog.com/license

Lymphocyte count (rs2275902). MyGeneLog™. https://www.mygenelog.com/variants/rs2275902

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