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Standard

Average diameter for VLDL particles

near LCTL · rs2218181

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−15, with 10 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 434,646 British ancestry individuals, 8,796 British Central/South Asian individuals, 6,573 British African individuals.

The effect Each copy of the C allele shifted the measure 0.01 nm lower (95% confidence interval 0.01-0.01); p = 9 × 10−12.

Where it sits Chromosome 15, band 15q22.31 — between genes, 2.2 kb from LINC01169.

How common each version is

CT
Korean KRGDB
C 30.5% · T 69.5%
Korean Korea4K
C 31.4% · T 68.7%
Korean Korea1K
C 31.9% · T 68.1%
Japanese ToMMo
C 29.8% · T 70.2%
Vietnamese
C 43.4% · T 56.6%
World gnomAD
C 28.1% · T 71.9%
World 1000 Genomes
C 26.5% · T 73.5%
World TOPMed
C 27.5% · T 72.5%

By ancestry gnomAD

East Asian
C 39.5% · T 60.6%
European (non-Finnish)
C 35.3% · T 64.7%
African / African American
C 14.6% · T 85.4%
South Asian
C 28.5% · T 71.5%
Admixed American (Latino)
C 25.9% · T 74.1%
Middle Eastern
C 35.7% · T 64.3%
Finnish
C 31.7% · T 68.3%
Ashkenazi Jewish
C 31.0% · T 69.0%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study. The ancestry rows are gnomAD's own groups (via Ensembl), as the survey defines them, not races.

What each result means

C/C Two copies of the version the research linked to Average diameter for VLDL particles. That is the strongest link of the three results. A link in a study is not a diagnosis.
C/T One copy of the version the research linked to Average diameter for VLDL particles. That is a smaller link than two copies.
T/T No copy of the version the research linked to Average diameter for VLDL particles. This is the starting point the study compared everyone against.
Source

Quoting this page

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Average diameter for VLDL particles (rs2218181). MyGeneLog™. https://www.mygenelog.com/variants/rs2218181

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