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Standard

Monocyte count

near UBASH3B · rs1945392

Strength of the evidence

3 / 4

Its strongest genetic-study result is p = 10−119, with 5 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals.

The effect The reported allele is C; the catalogue records no effect size ; p = 6 × 10−120.

How common The C allele had a frequency of about 12% in the people studied.

Where it sits Chromosome 11, band 11q24.1 — between genes, 5.9 kb from UBASH3B.

How common each version is

CG
Korean KRGDB
C 7.0% · G 93.0%
Korean Korea4K
C 7.5% · G 92.5%
Japanese ToMMo
C 7.2% · G 92.8%
Vietnamese
C 16.5% · G 83.5%
World gnomAD
C 13.4% · G 86.6%
World 1000 Genomes
C 12.8% · G 87.2%
World TOPMed
C 13.1% · G 86.9%

By ancestry gnomAD

East Asian
C 10.0% · G 90.0%
European (non-Finnish)
C 13.0% · G 87.0%
African / African American
C 15.3% · G 84.7%
South Asian
C 11.1% · G 88.9%
Admixed American (Latino)
C 12.4% · G 87.6%
Middle Eastern
C 9.6% · G 90.4%
Finnish
C 15.8% · G 84.2%
Ashkenazi Jewish
C 5.4% · G 94.6%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study. The ancestry rows are gnomAD's own groups (via Ensembl), as the survey defines them, not races.

What each result means

C/C Two copies of the version the research linked to Monocyte count. That is the strongest link of the three results. A link in a study is not a diagnosis.
C/G One copy of the version the research linked to Monocyte count. That is a smaller link than two copies.
G/G No copy of the version the research linked to Monocyte count. This is the starting point the study compared everyone against.
Source

Quoting this page

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Monocyte count (rs1945392). MyGeneLog™. https://www.mygenelog.com/variants/rs1945392

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