Sensitive

Mood disorders (PheCode 296)

ESR1 · rs1913475

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−11, with 1 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 65,347 African American or Afro-Caribbean cases, 48,451 African American or Afro-Caribbean controls, 31,196 Hispanic or Latin American cases, 24,578 Hispanic or Latin American controls, 2,539 East Asian ancestry cases, 3,860 East Asian ancestry controls, 191,200 European ancestry cases, 234,387 European ancestry controls.

The effect Each copy of the T allele shifted the measure 0.0298 higher (95% confidence interval 0.021-0.039); p = 2 × 10−11.

How common The T allele had a frequency of about 44% in the people studied.

Where it sits Chromosome 6, band 6q25.1 — in an intron of ESR1.

What each result means

C/C No copy of the version the research linked to Mood disorders (PheCode 296). This is the starting point the study compared everyone against.
C/T One copy of the version the research linked to Mood disorders (PheCode 296). That is a smaller link than two copies.
T/T Two copies of the version the research linked to Mood disorders (PheCode 296). That is the strongest link of the three results. A link in a study is not a diagnosis.
Source

Questions about rs1913475

What is rs1913475?

rs1913475 is a single position in the genome, in or near the ESR1 gene. Published research associates it with mood disorders (phecode 296). A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

Does having rs1913475 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs1913475 come from?

GWAS Catalog, Science (New York, N.Y.) 2024, PMID:39024449. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

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Mood disorders (PheCode 296) (rs1913475). MyGeneLog™. https://www.mygenelog.com/variants/rs1913475

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