Standard

SMPDL3A protein levels

TRDN · rs188242249

Where this position leads

Condition: Celiac Disease

rs188242249 Condition: Celiac Disease Celiac Disease Condition rs188242249 rs188242249 TRDN

What the study found

Who was studied 47,745 European ancestry individuals.

The effect Each copy of the T allele shifted the measure 0.169 lower (95% confidence interval 0.12-0.22); p = 1 × 10−12.

How common The T allele had a frequency of about 1% in the people studied.

Where it sits Chromosome 6, band 6q22.31 — in an intron of TRDN.

What each result means

C/C Published research associates this genotype with typical/baseline likelihood of SMPDL3A protein levels — no copies of the reported risk allele.
C/T Published research associates this genotype (one copy of the reported risk allele) with an intermediate association with SMPDL3A protein levels.
T/T Published research associates this genotype (two copies of the reported risk allele) with a higher likelihood of SMPDL3A protein levels compared to the general population.
Source

Questions about rs188242249

What is rs188242249?

rs188242249 is a single position in the genome, in or near the TRDN gene. Published research associates it with smpdl3a protein levels. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs188242249 linked to?

On MyGeneLog this position is linked to Celiac Disease. The research behind each link, and its sources, are set out on that condition page.

Does having rs188242249 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs188242249 come from?

GWAS Catalog, Nature genetics 2025, PMID:39789286. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

SMPDL3A protein levels (rs188242249). MyGeneLog™. https://www.mygenelog.com/variants/rs188242249

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